View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_high_16 (Length: 362)
Name: NF0859_high_16
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 46024256 - 46023900
Alignment:
| Q |
1 |
ggattcttccctaaaatgctgaaatcttgttcatgagtatttggaaagttagttttggcatttcttcctctaagaagccttgcagcagaatcatatgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024256 |
ggattcttccctaaaatgctgaaatcttgttcatgagtatttggaaagttagttttggcatttcttcctctaagaagccttgcagcagaatcatatgaca |
46024157 |
T |
|
| Q |
101 |
aagcagcatcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46024156 |
gagcagcatcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcct |
46024057 |
T |
|
| Q |
201 |
cactcctagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgttcctttctttgttctcatagggtttgtct--------a |
292 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
46024056 |
cactcctagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgtttctttctttgttctcatagggtttgtctatttcatga |
46023957 |
T |
|
| Q |
293 |
gggatcaatgaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
349 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46023956 |
gggatcaaagaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
46023900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 46265111 - 46265467
Alignment:
| Q |
1 |
ggattcttccctaaaatgctgaaatcttgttcatgagtatttggaaagttagttttggcatttcttcctctaagaagccttgcagcagaatcatatgaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46265111 |
ggattcttccctaaaatgctgaaatcttgttcatgagtatttggaaagttagttttggcatttcttcctctaagaagccttgcagcagaatcatatgaca |
46265210 |
T |
|
| Q |
101 |
aagcagcatcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46265211 |
gagcagcatcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcct |
46265310 |
T |
|
| Q |
201 |
cactcctagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgttcctttctttgttctcatagggtttgtct--------a |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
46265311 |
cactcctagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgtttctttctttgttctcatagggtttgtctatttcatga |
46265410 |
T |
|
| Q |
293 |
gggatcaatgaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46265411 |
gggatcaaagaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
46265467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 12508680 - 12508729
Alignment:
| Q |
154 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgtctcac |
203 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
12508680 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
12508729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 3160325 - 3160225
Alignment:
| Q |
103 |
gcagcatcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctca |
202 |
Q |
| |
|
||||| ||||| ||| |||||||||| |||||||| | ||||| ||||| | ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
3160325 |
gcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttctgaatggtatcttttatctcagctacccatcttcctgatggcctttgtctca |
3160226 |
T |
|
| Q |
203 |
c |
203 |
Q |
| |
|
| |
|
|
| T |
3160225 |
c |
3160225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 33274344 - 33274382
Alignment:
| Q |
159 |
gtctttgatctcagctatccatcttcctgatggcctttg |
197 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||| |
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| T |
33274344 |
gtctttgatctcagctacccatctccctgatggcctttg |
33274382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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