View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_high_19 (Length: 358)

Name: NF0859_high_19
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_high_19
NF0859_high_19
[»] chr5 (18 HSPs)
chr5 (97-283)||(37641433-37641616)
chr5 (97-285)||(37595880-37596068)
chr5 (109-285)||(37534650-37534823)
chr5 (185-283)||(37825465-37825563)
chr5 (109-285)||(37713174-37713347)
chr5 (185-282)||(37399313-37399410)
chr5 (204-285)||(37437251-37437332)
chr5 (186-282)||(37441499-37441593)
chr5 (186-283)||(37704220-37704317)
chr5 (186-282)||(37380834-37380930)
chr5 (186-282)||(37391452-37391548)
chr5 (186-285)||(37698343-37698442)
chr5 (109-160)||(37698465-37698516)
chr5 (109-160)||(37391378-37391429)
chr5 (109-160)||(37441616-37441666)
chr5 (186-260)||(37411817-37411891)
chr5 (216-285)||(37430307-37430376)
chr5 (109-137)||(37825596-37825624)
[»] chr3 (2 HSPs)
chr3 (186-279)||(14554615-14554708)
chr3 (109-160)||(14554728-14554779)
[»] chr4 (2 HSPs)
chr4 (186-285)||(16841390-16841489)
chr4 (186-283)||(24216248-24216345)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 283
Target Start/End: Complemental strand, 37641616 - 37641433
Alignment:
Q  97 attaagtgtaattaagtttctctaaatgggatccttttttattccattgccttattttaccttttacnnnnnnnnnnnnnnnnnnnnnattactcatttt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                     ||||||||||||    
T  37641616 attaagtgtaattaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttg---attactcatttt 37641520  T
Q  197 atttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatct 283  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37641519 acttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatct 37641433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 285
Target Start/End: Complemental strand, 37596068 - 37595880
Alignment:
Q  97 attaagtgtaattaagtttctctaaatgggatccttttttattccattgccttattttaccttttacnnnnnnnnnnnnnnnnnnnnnattactcatttt 196  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||                      |||||||||||    
T  37596068 attaagtgtaattatgtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcatttt 37595969  T
Q  197 atttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    | ||| |||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37595968 acttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 37595880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 109 - 285
Target Start/End: Complemental strand, 37534823 - 37534650
Alignment:
Q  109 taagtttctctaaatgggatccttttttattccattgccttattttaccttttacnnnnnnnnnnnnnnnnnnnnnattactcattttatttcatacact 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||                     ||||||||||||| ||| ||||||    
T  37534823 taagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttg---attactcattttacttcctacact 37534727  T
Q  209 ttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  37534726 ttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctca 37534650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 37825563 - 37825465
Alignment:
Q  185 attactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatct 283  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37825563 attactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatct 37825465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 285
Target Start/End: Complemental strand, 37713347 - 37713174
Alignment:
Q  109 taagtttctctaaatgggatccttttttattccattgccttattttaccttttacnnnnnnnnnnnnnnnnnnnnnattactcattttatttcatacact 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||                      |||||||||||| |||  |||||    
T  37713347 taagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgc---ttactcattttacttcccacact 37713251  T
Q  209 ttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37713250 ttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 37713174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 37399313 - 37399410
Alignment:
Q  185 attactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatc 282  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||| |||  ||||||||||    
T  37399313 attactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcattttttgttgacacttcatc 37399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 37437332 - 37437251
Alignment:
Q  204 acactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  37437332 acactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctca 37437251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 37441593 - 37441499
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatc 282  Q
    |||||||||||| ||| || |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  37441593 ttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 37704317 - 37704220
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatct 283  Q
    |||||||||||| ||| |||||||||||| |||||| ||||||||| | ||| ||||| |||||||||||| |||| |||||||||||||||||||||    
T  37704317 ttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatct 37704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 37380834 - 37380930
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatc 282  Q
    |||||||||||| |||  ||||||||||| |||||||||||||||| || |||||||| ||||| ||||||||||| |||||| |||||||||||||    
T  37380834 ttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 37391452 - 37391548
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatc 282  Q
    |||||||||||| ||| || ||| ||||| |||||||||  ||||| | |||||||||  |||||||||||||||| |||| |||||||||||||||    
T  37391452 ttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 37698442 - 37698343
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    |||||||||||| ||| |||||  ||||| | |||||||| |||||||  |||||||| ||||||||||||||||| ||||| || |||||||| |||||    
T  37698442 ttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctca 37698343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 37698516 - 37698465
Alignment:
Q  109 taagtttctctaaatgggatccttttttattccattgccttattttaccttt 160  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||| |||||    
T  37698516 taagttgctctaaatggggtccttttttattctattgccttattttgccttt 37698465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 37391378 - 37391429
Alignment:
Q  109 taagtttctctaaatgggatccttttttattccattgccttattttaccttt 160  Q
    |||||| ||||||||||| ||||| ||||||  |||||||||||||||||||    
T  37391378 taagttgctctaaatggggtccttgtttattttattgccttattttaccttt 37391429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 37441666 - 37441616
Alignment:
Q  109 taagtttctctaaatgggatccttttttattccattgccttattttaccttt 160  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||||||||||    
T  37441666 taagtatctctaaatggg-tccttttttattttattgccttattttaccttt 37441616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 37411817 - 37411891
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaact 260  Q
    |||||||||||| ||| ||||| |||||| | |||||| | ||||||| || |||||| ||||||||||| ||||    
T  37411817 ttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 37411891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 37430376 - 37430307
Alignment:
Q  216 tgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    ||||||| || |||||||  |||||||| ||||||||||| || || |||| | ||||||||||||||||    
T  37430376 tgtgcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctca 37430307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 37825624 - 37825596
Alignment:
Q  109 taagtttctctaaatgggatcctttttta 137  Q
    |||||||||||||||||||||||||||||    
T  37825624 taagtttctctaaatgggatcctttttta 37825596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 14554708 - 14554615
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttc 279  Q
    |||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14554708 ttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 14554779 - 14554728
Alignment:
Q  109 taagtttctctaaatgggatccttttttattccattgccttattttaccttt 160  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14554779 taagtttctctaaatgggatccttttttattctattgccttattttaccttt 14554728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 16841390 - 16841489
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatctca 285  Q
    ||||||| |||| |||| ||||||| ||| | |||||||||||||||| |||||| || ||||| ||||||||||| |||||||||||||||||||||||    
T  16841390 ttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 16841489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 24216248 - 24216345
Alignment:
Q  186 ttactcattttatttcatacactttctcactgtgcaaccaacatgacacctctgccttattacaattcaaaaactctttttctgtcaacacttcatct 283  Q
    |||||||||||| ||| ||||||| |||| | |||||||| |||||||  ||||| || ||||||||||| ||||| |||  ||||||||||||||||    
T  24216248 ttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatct 24216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2996 times since January 2019
Visitors: 6168