View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_high_23 (Length: 333)

Name: NF0859_high_23
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_high_23
NF0859_high_23
[»] chr4 (3 HSPs)
chr4 (38-333)||(1869554-1869849)
chr4 (142-316)||(1916736-1916910)
chr4 (40-112)||(1916916-1916988)
[»] chr7 (2 HSPs)
chr7 (40-316)||(17488418-17488694)
chr7 (40-316)||(17564520-17564796)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 38 - 333
Target Start/End: Complemental strand, 1869849 - 1869554
Alignment:
Q  38 gcagaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtg 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1869849 gcagaacgtgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtg 1869750  T
Q  138 ataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac 237  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1869749 ataatactcttccagagatcaaagcaagagtgtcaaaaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac 1869650  T
Q  238 ccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatcatttgtaaggtacataa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1869649 ccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatcatttgtaaggtacataa 1869554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 142 - 316
Target Start/End: Complemental strand, 1916910 - 1916736
Alignment:
Q  142 tactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccac 241  Q
    ||||||||||||| ||||||||| |||||        ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||    
T  1916910 tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctac 1916811  T
Q  242 cttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc 316  Q
    |||| || ||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||    
T  1916810 cttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatc 1916736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 1916988 - 1916916
Alignment:
Q  40 agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattca 112  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||  ||||||||||||||| ||| ||||    
T  1916988 agaacgtgtgagagagctagaagaagaagctggatccaacatttgtactaacaaaaggaccaaactgagttca 1916916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 40 - 316
Target Start/End: Complemental strand, 17488694 - 17488418
Alignment:
Q  40 agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat 139  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17488694 agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat 17488595  T
Q  140 aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc 239  Q
    ||||||||||||||| ||||||||| |||||        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  17488594 aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct 17488495  T
Q  240 accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc 316  Q
     ||||| || ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  17488494 gccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatc 17488418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 40 - 316
Target Start/End: Original strand, 17564520 - 17564796
Alignment:
Q  40 agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat 139  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17564520 agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat 17564619  T
Q  140 aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc 239  Q
    ||||||||||||||| ||||||||| |||||        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  17564620 aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct 17564719  T
Q  240 accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc 316  Q
     ||||| || ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  17564720 gccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatc 17564796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2214 times since January 2019
Visitors: 6159