View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0859_high_26 (Length: 329)
Name: NF0859_high_26
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 30403934 - 30404047
Alignment:
| Q |
30 |
ttttcttctctataattttaaggcgttgcttatgcaaacttatgtgtttcaaattgataaaattatattactttgttgcactgaaaattaacaagagaca |
129 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30403934 |
ttttcttctctataatttcaaggccttgctaatgcaaacttatgtttttcaaattggtaaaaatctattactttgttgcactgaaaattaaaaagagaca |
30404033 |
T |
|
| Q |
130 |
agaaggggtccaat |
143 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30404034 |
agaaggggtccaat |
30404047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 30409605 - 30409685
Alignment:
| Q |
140 |
caattttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacaggccatttttggatcgtaattt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409605 |
caattttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacaggccatttttggatcgtaattt |
30409685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 140 - 292
Target Start/End: Original strand, 30412094 - 30412246
Alignment:
| Q |
140 |
caattttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacaggccatttttggatcgtaatttagttgcatgggccaaacaa |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||| | ||||| |||| ||| || ||| | ||||| |||| ||||||||| | | |
|
|
| T |
30412094 |
caattttggggttgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagcca |
30412193 |
T |
|
| Q |
240 |
ttactcaccagcaaacgcaaaatatctcaagtcatggatgctcgtatagaagg |
292 |
Q |
| |
|
||||||| || ||||| ||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
30412194 |
ttactcaacaacaaacataaaatctctcaagttatggatgttcgtatagaagg |
30412246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 300
Target Start/End: Original strand, 30423255 - 30423408
Alignment:
| Q |
147 |
ggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacaggccatttttggatcgtaatttagttgcatgggccaaacaattactca |
246 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| | || ||| ||||| ||| | || | | || | | ||||||||||||||||||| | |||||||| |
|
|
| T |
30423255 |
ggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccgaccgtctggagagcatgatttagttgcatgggccaagccattactca |
30423354 |
T |
|
| Q |
247 |
ccagcaaacgcaaaatatctcaagtcatggatgctcgtatagaaggacaatact |
300 |
Q |
| |
|
|||||||| || || |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
30423355 |
tgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatact |
30423408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 30405497 - 30405557
Alignment:
| Q |
143 |
ttttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacaggcca |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || |||| |||||| ||| | ||||||||| |
|
|
| T |
30405497 |
ttttggggttgttctcctggaaattatgtcgggaaaacgtgcattggattataacaggcca |
30405557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 30413105 - 30413149
Alignment:
| Q |
30 |
ttttcttctctataattttaaggcgttgcttatgcaaacttatgt |
74 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
30413105 |
ttttcttctctataatttcaatgcgttgcttatacaaacttatgt |
30413149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 30410575 - 30410610
Alignment:
| Q |
108 |
cactgaaaattaacaagagacaagaaggggtccaat |
143 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30410575 |
cactgaaaattaacaagagacaagaagaggtccaat |
30410610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1864 times since January 2019
Visitors: 6150