View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0859_high_30 (Length: 312)
Name: NF0859_high_30
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 15935441 - 15935563
Alignment:
| Q |
87 |
tatgtatgtatgcacattacatacctgcaagccaccataatatatgaatccaacggaaccagcgtaaaggatacctaacacaattagaaagaaacaaata |
186 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15935441 |
tatgtatgtatgtacattacatacctggaagccaccataatatatgaatccaacggaaccagcgtaaaggatacctaaaacaattagaaagaaacaaata |
15935540 |
T |
|
| Q |
187 |
agggatgtgatgagcaatagcat |
209 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
15935541 |
agggttgtgatgagcaatagcat |
15935563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 15935587 - 15935670
Alignment:
| Q |
229 |
tgggatgaagaagaaagagtaagagtacaaactgtaaataataaaatccttcaaagcaacgggctcgagtatttggggttcggg |
312 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15935587 |
tgggatgcagaagaaagagtaaaagtacaaactgtaaataataaaatccttcaaagcaactggctcgagtatttggggttcggg |
15935670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15935496 - 15935549
Alignment:
| Q |
1 |
gaaccagcgtaaaggatacctaaaacaattagaaagcaacaaataagggatgtg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
15935496 |
gaaccagcgtaaaggatacctaaaacaattagaaagaaacaaataagggttgtg |
15935549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 35938556 - 35938528
Alignment:
| Q |
80 |
atgtatgtatgtatgtatgcacattacat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35938556 |
atgtatgtatgtatgtatgcacattacat |
35938528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3743 times since January 2019
Visitors: 6175