View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_high_32 (Length: 288)
Name: NF0859_high_32
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 145927 - 145717
Alignment:
| Q |
11 |
caatggagaa-caacaacctatcaccaacttcaactttacttgccttaacaaatgcatgccaaccactaactatgtatctcttatgaggatcttcttcat |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
145927 |
caatggagaaacaacaacctatcaccaacttcaacttgacttgccttaacaaatgcatgccaaccactagctatgtatctcttatgaggatctacttcat |
145828 |
T |
|
| Q |
110 |
cagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagcatgatgttcttatcagaactcaaaacaccttcatatgt |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145827 |
cagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagcatgatgttcttatcagaactcaaaacaccttcatatgt |
145728 |
T |
|
| Q |
210 |
aaggtgatgag |
220 |
Q |
| |
|
||||||||||| |
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|
| T |
145727 |
aaggtgatgag |
145717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 19784368 - 19784570
Alignment:
| Q |
11 |
caatggagaacaacaacctatcaccaacttcaactttacttgccttaacaaatgcatgccaaccactaactatgtatctcttatgaggatcttcttcatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| || |
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| T |
19784368 |
caatggagaacaacaacctatcaccaacttcaacttggcttgccttaacaaatgcatgccaactactagatatgtatctcttataaggatctccttcttc |
19784467 |
T |
|
| Q |
111 |
agcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagcat-gatgttcttatcagaactcaaaacaccttcatatgt |
209 |
Q |
| |
|
|| || ||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||| |||||||| ||| | ||||||| |||||||||||| |
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| T |
19784468 |
agtaaaaacctcacagttaaatgcatcaactgcatcttgatctcgatcaatttgagtcagcataaatgttcttctcaaagctcaaaataccttcatatgt |
19784567 |
T |
|
| Q |
210 |
aag |
212 |
Q |
| |
|
||| |
|
|
| T |
19784568 |
aag |
19784570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 21650825 - 21650624
Alignment:
| Q |
11 |
caatggagaacaacaacctatcaccaacttcaactttacttgccttaacaaatgcatgccaaccactaactatgtatctcttatgaggatcttcttcatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| || |
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|
| T |
21650825 |
caatggagaacaacaacctatcaccaacttcaacttggcttgccttaacaaatgcatgccaaccactatatatgtatctcttataaggatctccttcttc |
21650726 |
T |
|
| Q |
111 |
agcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagcatgatgttcttatcagaactcaaaacaccttcatatgta |
210 |
Q |
| |
|
|| | |||||| || ||||| ||| ||||||||| |||||| ||||| |||||| ||||| |||||||| ||||| ||||||| ||||||||||||| |
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|
| T |
21650725 |
agtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatcaatttgagttagcataatgttcttctcagagctcaaaataccttcatatgta |
21650626 |
T |
|
| Q |
211 |
ag |
212 |
Q |
| |
|
|| |
|
|
| T |
21650625 |
ag |
21650624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 14572402 - 14572603
Alignment:
| Q |
11 |
caatggagaacaacaacctatcaccaacttcaactttacttgccttaacaaatgcatgccaaccactaactatgtatctcttatgaggatcttcttcatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||| || |
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|
| T |
14572402 |
caatggagaacaacaacctatcaccaacttcaacttggcttgccttaacaaatgcatgcacaccactagatatgtatctcttataaggatctccttcttc |
14572501 |
T |
|
| Q |
111 |
agcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagcatgatgttcttatcagaactcaaaacaccttcatatgta |
210 |
Q |
| |
|
|| | || ||| | ||||| ||| ||||||||| |||||| ||||| |||||| ||||| |||||||| ||||| ||||||| ||||||||||||| |
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|
| T |
14572502 |
agtcaaaatctcgtagttaaatgaatccactgcatctcgatctcgatcaatttgagtcagcataatgttcttctcagagctcaaaataccttcatatgta |
14572601 |
T |
|
| Q |
211 |
ag |
212 |
Q |
| |
|
|| |
|
|
| T |
14572602 |
ag |
14572603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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