View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_high_39 (Length: 254)

Name: NF0859_high_39
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_high_39
NF0859_high_39
[»] chr4 (2 HSPs)
chr4 (6-223)||(32663197-32663411)
chr4 (2-47)||(17778235-17778280)
[»] chr2 (2 HSPs)
chr2 (2-47)||(26370139-26370184)
chr2 (6-47)||(27634820-27634861)
[»] chr1 (2 HSPs)
chr1 (2-47)||(20491180-20491225)
chr1 (5-36)||(27877394-27877425)
[»] scaffold0250 (1 HSPs)
scaffold0250 (2-48)||(21326-21372)
[»] chr8 (3 HSPs)
chr8 (1-44)||(95853-95896)
chr8 (5-33)||(18178819-18178847)
chr8 (5-33)||(21276774-21276802)
[»] chr6 (1 HSPs)
chr6 (5-33)||(32895715-32895743)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 32663411 - 32663197
Alignment:
Q  6 aaaaggatgcatcaatattgcatttgtatctacatgcatttgaaaagtgcagaaccaggataaaacttttactaatacataatcaagcaaaatctatnnn 105  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||        
T  32663411 aaaaggatgcatcaatattgcatttgtatctaccagcatttgaaaagtgcagaaccaggataaaactttta---atacataatcaagcaaaatctaaaaa 32663315  T
Q  106 nnnnnnttcacgagccattttctacaatgttgtggaaggaattcggagcattgatgcaacatccattctgaaacgttgatcttggttaaaatgtgatcaa 205  Q
          | |||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32663314 aaaaaatacacaggccattttctacaatgttgtggaaggaattcggggcattgatgcaacatccattctgaaacgttgatcttggttaaaatgtgatcaa 32663215  T
Q  206 tgaaaaatagatgcacca 223  Q
    ||||||| ||||||||||    
T  32663214 tgaaaaaaagatgcacca 32663197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 17778235 - 17778280
Alignment:
Q  2 ttcgaaaaggatgcatcaatattgcatttgtatctacatgcatttg 47  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  17778235 ttcgaaaaggatgcatcaatattgcatttgtatctacctgcatttg 17778280  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 26370184 - 26370139
Alignment:
Q  2 ttcgaaaaggatgcatcaatattgcatttgtatctacatgcatttg 47  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  26370184 ttcgaaaaggatgcatcaatattgcatttgtatctacctgcatttg 26370139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 27634861 - 27634820
Alignment:
Q  6 aaaaggatgcatcaatattgcatttgtatctacatgcatttg 47  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  27634861 aaaaggatgcatcaatattgcatttgtatctacttgcatttg 27634820  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 20491225 - 20491180
Alignment:
Q  2 ttcgaaaaggatgcatcaatattgcatttgtatctacatgcatttg 47  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  20491225 ttcgaaaaggatgcatcaatattgcatttgtatctacctgcatttg 20491180  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 27877425 - 27877394
Alignment:
Q  5 gaaaaggatgcatcaatattgcatttgtatct 36  Q
    ||||||||||||||||||||||||||||||||    
T  27877425 gaaaaggatgcatcaatattgcatttgtatct 27877394  T

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Target: scaffold0250 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 21372 - 21326
Alignment:
Q  2 ttcgaaaaggatgcatcaatattgcatttgtatctacatgcatttga 48  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  21372 ttcgaaaaggatgcatcaatattgcatttatatctacctgcatttga 21326  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 95896 - 95853
Alignment:
Q  1 tttcgaaaaggatgcatcaatattgcatttgtatctacatgcat 44  Q
    ||||||||||||||||||||||||||||||| |||||| |||||    
T  95896 tttcgaaaaggatgcatcaatattgcatttgaatctacctgcat 95853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 18178847 - 18178819
Alignment:
Q  5 gaaaaggatgcatcaatattgcatttgta 33  Q
    |||||||||||||||||||||||||||||    
T  18178847 gaaaaggatgcatcaatattgcatttgta 18178819  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 21276774 - 21276802
Alignment:
Q  5 gaaaaggatgcatcaatattgcatttgta 33  Q
    |||||||||||||||||||||||||||||    
T  21276774 gaaaaggatgcatcaatattgcatttgta 21276802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 32895743 - 32895715
Alignment:
Q  5 gaaaaggatgcatcaatattgcatttgta 33  Q
    |||||||||||||||||||||||||||||    
T  32895743 gaaaaggatgcatcaatattgcatttgta 32895715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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