View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_high_4 (Length: 552)
Name: NF0859_high_4
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 31156076 - 31156474
Alignment:
| Q |
1 |
tcaagtttttcagcctttttaaaacatggataataatgattaggtatttgtttatgcaatttccaaacatgatacatgattaatccaaattcaataataa |
100 |
Q |
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| T |
31156076 |
tcaagtttttcagcctttttaaaacatgcataataatgattaggtatttgtttatgcaatttccaaacatgatacatgattaatccaaattcaataataa |
31156175 |
T |
|
| Q |
101 |
atgatttgtaatggaacaatttgcccacaaagttgaaaatttgttgaaaaccaattttattaatgtttcggatcgatacaaagtccatctaaactggacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31156176 |
atgatttgtaatggaacaatttgcccacaaagttgaaaatttgttgaaaaccaattttattaatgtttcggatcgatacaaaatccatctaaactggacc |
31156275 |
T |
|
| Q |
201 |
ttacatgccagatccactgcacacgcgccctacaagtataatgacacacgtgatagaaataagagctgatcaatcaatcactcgatatatcactaaacga |
300 |
Q |
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| T |
31156276 |
ttacatgccagatccactgcacacgcgccctacaagtataatgacacacgtgatagaaataagagttgatcaatcaatcactcgatatatcactaaacga |
31156375 |
T |
|
| Q |
301 |
tattttcctccaattctcgcgaagttccccactatacggggacttctgcattcgggagaaagacatgcattttattctgaccacttcccattcatctca |
399 |
Q |
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| T |
31156376 |
tattttcctccaattctcgtgaagttccccactatacggggacttctgcattcggaagaaaggtatgcattttattctgaccacttctcattcatctca |
31156474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 421 - 549
Target Start/End: Complemental strand, 2102620 - 2102493
Alignment:
| Q |
421 |
ctgttgcaaacccaataaaaatatgatggtaaattcggattatcttttaatgttatcattattcaattcattcagatacaatttaagtgacaaagttata |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
2102620 |
ctgttgcaaacccaataaaaatatgatggtaaattcggattatcttttaatgttatcattattcaattcattcagatgcaatttaagtga-taagttata |
2102522 |
T |
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| Q |
521 |
ataaatgaagttaggttagtgcatacaca |
549 |
Q |
| |
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||| |||||| ||||||| |||||||||| |
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|
| T |
2102521 |
atacatgaagataggttaatgcatacaca |
2102493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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