View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_high_42 (Length: 252)
Name: NF0859_high_42
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41920884 - 41920638
Alignment:
| Q |
1 |
ctcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacct |
100 |
Q |
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| T |
41920884 |
ctcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacct |
41920785 |
T |
|
| Q |
101 |
gacatgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtacagcatgtta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41920784 |
gacatgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaatttggcttatgtatttgtacagcatgtta |
41920685 |
T |
|
| Q |
200 |
cacagtagtagttaaaaaaggtatacatttaaatacatattcttcga |
246 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
41920684 |
cacagtagtagttgaaaaaggtatacatttaaatacatattattcga |
41920638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 26829870 - 26829966
Alignment:
| Q |
5 |
actagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctg |
101 |
Q |
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| T |
26829870 |
actagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatgacctg |
26829966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 26782981 - 26783078
Alignment:
| Q |
5 |
actagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
102 |
Q |
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||||| ||| |||| |||||||| ||||||||||||| || | ||||||| ||||||||| ||||||||||| || | |||||| | |||||||| |
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| T |
26782981 |
actagtctctagtataccaataattgttgcctttgctcgatttaaagacatggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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