View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_high_49 (Length: 222)
Name: NF0859_high_49
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 2102486 - 2102620
Alignment:
| Q |
14 |
cccttaatgtgtatgcactaacctaacttcatttattataactttatcacttaaattgtatctgaatgaattgaataatgataacattaaaagataatcc |
113 |
Q |
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| T |
2102486 |
cccttactgtgtatgcattaacctatcttcatgtattataactt-atcacttaaattgcatctgaatgaattgaataatgataacattaaaagataatcc |
2102584 |
T |
|
| Q |
114 |
gaatttaccatcatatttttattgggtttgcaacag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2102585 |
gaatttaccatcatatttttattgggtttgcaacag |
2102620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 38058421 - 38058475
Alignment:
| Q |
157 |
tttgtcaaattcattttaatgtaagttctaaaacgttgcagctatacctatgata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38058421 |
tttgtcaaattcattttaatgtaagttctaaaacgttgcagctatacctatgata |
38058475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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