View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_low_1 (Length: 960)

Name: NF0859_low_1
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_low_1
NF0859_low_1
[»] chr7 (1 HSPs)
chr7 (1-939)||(31650656-31651582)


Alignment Details
Target: chr7 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 939
Target Start/End: Complemental strand, 31651582 - 31650656
Alignment:
Q  1 gtcacacgtttctttatagtcctactggaaccacagtcaaagaaacatggaaattgtgttttgattttcaccaaaacatggaaatttgcaaaaaatagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||   |  ||||||      ||||||||||||||||||||||||||||||||    
T  31651582 gtcacacgtttctttatagtcctactggaaccacagtcaaagaac---gggcttgatgtttt------caccaaaacatggaaatttgcaaaaaatagta 31651492  T
Q  101 ttgtattagaaattgtgttttgatttgannnnnnn-ggtagagtcttctaatataaacgtatctgcaaagtttagtagcattctaatatagtcttatttg 199  Q
    |||||||||| |||||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||    
T  31651491 ttgtattagagattgtgttttgatttgattttttttggtagagtcttctaacataaacgtatctgcaaagtttagtagcattctaatatagccttaattg 31651392  T
Q  200 annnnnnnnctcttcactatagtactattttcatttataggagggacaatgtaggagaaatggtttaaattttgaaaagaaattgatgatttattcttca 299  Q
    |        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31651391 attttttttc-cttcactatagtactattttcatttataggagggacaatgtaggagaaatggtttaaattttgaaaagaaattgatgatttattctt-- 31651295  T
Q  300 aattgtttctttcaaattatattttgatgccaatacattattattgactagttaagaaaattaacatttcaaaattcatgaaaaactgcaggaatttgta 399  Q
               ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31651294 -----------tcaaattatattttgatgccaatacattattattgactagttaagtaaattaacatttcaaaattcatgaaaaactgcaggaatttgta 31651206  T
Q  400 aaggcagttgttgcttatcagaagaggctgaatacctctgtgcaaaagcctctaaaacttaataaggaaacggaaaacaaaaggaaaagtatagtgcgta 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31651205 aaggcagttgttgcttatcagaagaggctgaatacctctgtgcaaaagcctctaaaacttaataaggaaatggaaaacaaaaggaaaagtatagtgcgta 31651106  T
Q  500 gtttctcacttgcaaaagacctctacaatcatggccttggtatgagctccaccaaagaatctgagcttcaagaaggggcagagtttctagaggtaatgca 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31651105 gtttctcacttgcaaaagacctctacaatcatggccttggtatgagctccaccaaagaatctgagcttcaagaaggggcagagtttctagaggtaatgca 31651006  T
Q  600 ctatcacaatttctcagttgttcaagttactttttatgtagcaccgacagaatgcatgtctagtgtccgaacgagtcag-----------tgtctggtgt 688  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||           ||||||||||    
T  31651005 ctatcacaatatctcagttgttcaagttactttttatgtagcaccgacagaatatttgtctagtgtccgaacgagtcagtgtcgagtcagtgtctggtgt 31650906  T
Q  689 ctgtattcataagttaattcatgacgtgctgcatcatatgaatgcgatagtc-ttttttggcttaattacacttttggtctctatagttaagagtttttc 787  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||| |    
T  31650905 ctgtattcataagttaattcatgacgtgctgcatcatatgaatgcgatagtcttttttttgcttaattacacttttagtctctatagtt-agagttttgc 31650807  T
Q  788 tattttgtcccctctagattttccgaccgattttagtaccgccaaacaattatagttcacatatgtcctttattgtagtgaaatattgatgtgtattgaa 887  Q
    ||||||||||||||||||||||| |||||||||||||||| || | | |||||| ||||||||  ||||||| |||| ||||||||| ||||||||||||    
T  31650806 tattttgtcccctctagattttctgaccgattttagtacctcc-atcgattatatttcacataaatcctttaatgtattgaaatatttatgtgtattgaa 31650708  T
Q  888 tttgcggtgaaatagagcctgtggtgtgcaacaagagaaaggggtaaagcaa 939  Q
    ||||| || ||||| |||||   ||||||||||||||||| || ||||||||    
T  31650707 tttgcagtcaaatacagccttgagtgtgcaacaagagaaaaggttaaagcaa 31650656  T

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