View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0859_low_10 (Length: 462)
Name: NF0859_low_10
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 44924252 - 44924582
Alignment:
| Q |
1 |
cattaatgcaagtttcacaattataagttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtttcggttggatacacggg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
44924252 |
cattaatgcaagtttcacagttataagttctcaaaaggcacaggaaagtcctacaccatatgaagcatagttggatcaaagtttcggttggatacacagg |
44924351 |
T |
|
| Q |
101 |
tataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatcatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44924352 |
tataccatcaaaataagcaatatcaaacag-------ctaaataatattctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatcatcaa |
44924444 |
T |
|
| Q |
201 |
atgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctcgagcaaagatttcctcacacaataaacagggatggaaaatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44924445 |
atgtattggagcaaaacttaatacttagaaaagaaaggat-aaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatggaaaatgg |
44924543 |
T |
|
| Q |
301 |
taaaagtcatttgcatgatagaaaatctaaagtctagga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44924544 |
taaaagtcatttgcatgatagaaaatctaaagtctagga |
44924582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 60 - 338
Target Start/End: Original strand, 6908338 - 6908608
Alignment:
| Q |
60 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacg |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
6908338 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccataaaaacaagcaatatcaaacagctaaa-------taatattctcttacaca |
6908430 |
T |
|
| Q |
160 |
cagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctcg |
259 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |
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|
| T |
6908431 |
cagcatcaagtaaaaagttcaattatcacaaagatcatcaaatgtattggagcaaaac-taatacttagaaaagaaaagat-caaaaacaacatgtcttg |
6908528 |
T |
|
| Q |
260 |
agcaaagatttcctcacacaataaacagggat-ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctagg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6908529 |
agcaaagatttcctcacacaataaacagggatgggaaaatggtaaaagtcatttgcatgacagaaaatctaaagtctagg |
6908608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 6901855 - 6901713
Alignment:
| Q |
92 |
atacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaa |
191 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||| |||||| |||| ||||||||||| || ||||| ||||||||||||||||| ||||| |
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|
| T |
6901855 |
atacacggatataccatcaaaacatgcaatatcaaactgctaaa-------taatattctcttacacacaccatcaggtaaaaggttcaattataacaaa |
6901763 |
T |
|
| Q |
192 |
gatcat-caaatgtattggagcaaaacttaatacttagaaaagaaaagat |
240 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6901762 |
gataattcaaatgtattggagcaaaacttaatacttggaaaagaaaagat |
6901713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 60 - 338
Target Start/End: Complemental strand, 202649 - 202378
Alignment:
| Q |
60 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
202649 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccatcaaaacaagcaatatcaaacagctaaa-------taatattctcttacaca |
202557 |
T |
|
| Q |
160 |
cagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctcg |
259 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
202556 |
gagcatcaagtaaaaggttcaatcatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagat-caaaaacaacatgtctcg |
202458 |
T |
|
| Q |
260 |
agcaaagatttcctcacacaataaacagggat-ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctagg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
202457 |
agcaaagatttcctcacacaataaacagggatgggaaaatggtaaaagtcatttgcatgacagaaaatctaaagtctagg |
202378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 92 - 339
Target Start/End: Original strand, 206482 - 206723
Alignment:
| Q |
92 |
atacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaa |
191 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||| |||||| |||| ||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
206482 |
atacacggatataccatcaaaacatgcaatatcaaactgctaaa-------taatattctcttacacacaccatcaagtaaaaggttcaattataacaaa |
206574 |
T |
|
| Q |
192 |
gatcatc-aaatgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctcgagcaaagatttcctcacacaataaacaggga |
290 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
206575 |
gatcatttaaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaa-caacatgtctcaagcaaagatttcctcacacaataaacaggga |
206673 |
T |
|
| Q |
291 |
tgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
339 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
206674 |
tgggaaaacggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
206723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 167 - 339
Target Start/End: Complemental strand, 29514747 - 29514575
Alignment:
| Q |
167 |
aagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctcgagcaaag |
266 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| |||||||||||| |
|
|
| T |
29514747 |
aagtaaaaggttcaattatcataaagatcatcaaatgtattggagcaaaactctatacttggaaaagaaaagctcaaaaag-aacatctctcgagcaaag |
29514649 |
T |
|
| Q |
267 |
atttcctcacacaataaacagggat-ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
339 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29514648 |
atttactcgcacaataaacaaggataggaaaatggtaaaagtcatatgcatgatagaaaatctaaagtctagga |
29514575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 43997926 - 43998003
Alignment:
| Q |
263 |
aaagatttcctcacacaataaacagggatgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
339 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
43997926 |
aaagatttcctcacacaataaacaaggatgggaaaatggtaaaagtcatatgcatcatagaaaatctaaagtctagga |
43998003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 43626417 - 43626277
Alignment:
| Q |
201 |
atgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctc-gagcaaagatttcctcacacaataaacagggatgg--aaaa |
297 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||| ||||| ||||| ||| ||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
43626417 |
atgtattggagcaaaacttaatatttggaaaagaagagataaaaaa-caacacgtctctgagaaaagatttccttacacaataaacaaggatgagaaaaa |
43626319 |
T |
|
| Q |
298 |
tggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
339 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
43626318 |
tggtaaaagtcatatgcatcatagaaaatctaaagtctagga |
43626277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 43632417 - 43632255
Alignment:
| Q |
27 |
gttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtttcggttgg----atacacgggtataccatcaaaataagcaata |
122 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| |||| | |
|
|
| T |
43632417 |
gttcgcaaaaggcacgggaaagacctacaccatatgaagcacagttgattcaaagttttggttggttggatacacgggtataccatcaaaatatgcaaaa |
43632318 |
T |
|
| Q |
123 |
tcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatcat |
197 |
Q |
| |
|
|||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43632317 |
tcaaactgctaa---cta---------ttcttacatacaacatcaagtaaaaggttcaattatcacaaagatcat |
43632255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 43997781 - 43997894
Alignment:
| Q |
27 |
gttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtt----tcggttggatacac-gggtataccatcaaaataagcaat |
121 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||| |||| |
|
|
| T |
43997781 |
gttcccaaaaggcacgggaaagacctacaccatatgaagcatagttgattcaaagttttggttggttggatacacggggtataccatcaaaatatgcaaa |
43997880 |
T |
|
| Q |
122 |
atcaaacagctaaa |
135 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
43997881 |
atcaaactgctaaa |
43997894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 197 - 339
Target Start/End: Complemental strand, 24653035 - 24652893
Alignment:
| Q |
197 |
tcaaatgtattggagcaaaacttaatacttagaaaagaaaagatnnnnnnncaacatgtctcgagcaaagatttcctcacacaataaacagggatgg-aa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24653035 |
tcaaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaa-caacatgttttgagcaaagatttcctcacacaataaacagggatgggaa |
24652937 |
T |
|
| Q |
296 |
aatggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
339 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652936 |
aacggtaaaagtcatttgcatgatagaaaatctaaagtctagga |
24652893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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