View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_18 (Length: 389)
Name: NF0859_low_18
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 87 - 376
Target Start/End: Complemental strand, 49494908 - 49494633
Alignment:
| Q |
87 |
agctgctgcgtagaagccccacatcaacaagtcaagactcaagaaaggaactgagtaggtgttaaatggaactgcaaggccatatttcaactcatctctc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49494908 |
agctgctgcgtagaagccccacatcaacaagtcaagactcaagaaaggaactgagtaggtgttaaatggagctgcaaggccatatttcaactcatctctc |
49494809 |
T |
|
| Q |
187 |
ttgacctttcggctaagatcgcgtgtagtatttgttcttatcggtataaatgtgtgcaaaatgattttaagcagtttaattatccaaacttaattaataa |
286 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49494808 |
ttgaccttttggctaagatcgcgtttagtatttgttcttatcggtatagatgtgtgcaaaatgattttaagcagtttaattatccaaacttaattaataa |
49494709 |
T |
|
| Q |
287 |
gctagtttgaacttatttcaactctttaaccaaaatcattacgcgaacttcagcaaacatataaataattacaccagaaaaacgaaattc |
376 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49494708 |
gctagtttgaacttatttcaaccctttaaccaaaa--------------tcagcaaacatataaataattacaccagaaaaacgaaattc |
49494633 |
T |
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