View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_low_2 (Length: 946)

Name: NF0859_low_2
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_low_2
NF0859_low_2
[»] chr1 (5 HSPs)
chr1 (311-717)||(23202814-23203220)
chr1 (99-317)||(23193883-23194096)
chr1 (768-905)||(23203409-23203547)
chr1 (733-776)||(23203272-23203315)
chr1 (906-946)||(23204849-23204889)
[»] chr5 (12 HSPs)
chr5 (158-359)||(32254776-32254973)
chr5 (130-234)||(32236299-32236403)
chr5 (130-234)||(32248493-32248597)
chr5 (449-616)||(32255022-32255187)
chr5 (103-171)||(32254664-32254729)
chr5 (643-698)||(32264478-32264533)
chr5 (869-904)||(32264762-32264797)
chr5 (733-811)||(32264597-32264675)
chr5 (545-626)||(32248852-32248935)
chr5 (906-944)||(32255881-32255919)
chr5 (643-700)||(32255415-32255472)
chr5 (820-873)||(32255573-32255626)
[»] chr4 (1 HSPs)
chr4 (906-946)||(28719574-28719614)
[»] chr6 (1 HSPs)
chr6 (346-408)||(21847752-21847814)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 311 - 717
Target Start/End: Original strand, 23202814 - 23203220
Alignment:
Q  311 ggttttgttgttagtcgtgttattgaatcacactcttttccttcatgaggttttatcttactagattttcttgataagatttttaacgaggcagttgtcc 410  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||    
T  23202814 ggttttgttgttagtcgtgttattgaatcaaactctttaccttcatgaggttttatcctactaggttttcttgataagatttttaacgaggcagttttcc 23202913  T
Q  411 aaattctttgtagttttcttgggttttggagatatattttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaattta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23202914 aaattctttgtagttttcttgggttttggagatatattttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaattta 23203013  T
Q  511 ggatctcaacctagctaggatgtcaagcttattatctaatgcccatgcactcaaatttttgcaaagttgagcatgacttccatggaggaagaatgcaata 610  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  23203014 ggatctcaacctagttaggatgtcaagctcatcatctaatgcccatgcactctaatttttgcaaagttgaacatgacttccatggaggatgaatgcaata 23203113  T
Q  611 aacttattatagaatccttaaacaaatgtcacctggcttatcaaatgtcacatggggctcaacacattatagtgctccgtgcggtcattaatattagggc 710  Q
     |||||| ||||||| |||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23203114 tacttatcatagaattcttaaacaaatgtcacttggcttatcaaatgtcaactggggctcaacacattacagtgctccgtgcggtcattaatattagggc 23203213  T
Q  711 ggagttt 717  Q
    |||||||    
T  23203214 ggagttt 23203220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 99 - 317
Target Start/End: Original strand, 23193883 - 23194096
Alignment:
Q  99 atagggacatcattccatctcctcctcctcataccttatgggatggaaatttccaacctcttctctataaggaaaactatgctccagctcttccttctcc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23193883 atagggacatcattccatctcctcctcctcataccttatgggatggaaatttccaacctcttctctataaggaaaactatgctccagctcttccttctcc 23193982  T
Q  199 tcatctgaattaaatgttgaaattcaaactgtattaatgtcaaggtgtatcaagaagacttctttagaaagttacaaatttcgatgatggttagttgctt 298  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  23193983 tcatctgaattaaatgttgaaattcaaac-----taatgtcaaggtgtatcaacaagacttctttagaaagttacagatttagatgatggttagttgctt 23194077  T
Q  299 tattttgagtttggttttg 317  Q
    |||||||||||||||||||    
T  23194078 tattttgagtttggttttg 23194096  T

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Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 768 - 905
Target Start/End: Original strand, 23203409 - 23203547
Alignment:
Q  768 cattaaggaagagagggccttggttgaatctacatcttttttatgaaccgacaagggcaaacccagacacatacaatggaggggaccagctacacatact 867  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  23203409 cattaaggaggagagggccttgggtgaatctacatcttgtttatgaactgacaagggcaatctcagactcatacaatggaagggaccagctacacatact 23203508  T
Q  868 tgataaaattat-aagatgcaaataattgcaagtaacta 905  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  23203509 tgataaaattataaagatgcaaataattgcaagtaacta 23203547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 733 - 776
Target Start/End: Original strand, 23203272 - 23203315
Alignment:
Q  733 tgagcttcacaaactttcccctaaacatagactaacattaagga 776  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  23203272 tgagcttcacaaactttcccctaaacatagaccagcattaagga 23203315  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 906 - 946
Target Start/End: Original strand, 23204849 - 23204889
Alignment:
Q  906 aatatgattaattgggctctcagagacaaacaagagttcat 946  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  23204849 aatatgattaattggactctcagagacgaacaagagttcat 23204889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 2e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 158 - 359
Target Start/End: Original strand, 32254776 - 32254973
Alignment:
Q  158 cttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactgtattaatgtcaaggtgtatc-aagaaga 256  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||| |    
T  32254776 cttctctataaggacagctatgttccagctcttccttctcctcatcctaattaaatgttgaaattcaaactgtattaatatcaaggtgtatcaaagaaaa 32254875  T
Q  257 cttctttagaaagttacaaatttcgatgatggttagttgctttattttgagtttggttttgttgttagtcgtgttattgaatcacactcttttccttcat 356  Q
    |||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||| |||||| ||     ||||||||||  ||||||||| ||||||    
T  32254876 cttctttagaaagttatagatttagatgatggttagttgttttattttgagtttggtcttgttgcta-----gttattgaattgcactctttttcttcat 32254970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 32236299 - 32236403
Alignment:
Q  130 taccttatgggatggaaatttccaacctcttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactg 229  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32236299 tacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttg 32236398  T
Q  230 tatta 234  Q
    |||||    
T  32236399 tatta 32236403  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 32248493 - 32248597
Alignment:
Q  130 taccttatgggatggaaatttccaacctcttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaaactg 229  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32248493 tacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttg 32248592  T
Q  230 tatta 234  Q
    |||||    
T  32248593 tatta 32248597  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 449 - 616
Target Start/End: Original strand, 32255022 - 32255187
Alignment:
Q  449 ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagctaggatgtcaagcttattatcta 548  Q
    |||||||||||||| |  |||||||||||||||| |||||||||||||||||| ||||||| || | ||||| ||  |||||||||||  || |  |||     
T  32255022 ttgtatttctttatgt--caataaatttgttagggtgttgcaaatgataggtagtgaattttgggtgtcaacttaattaggatgtcaactttttcttctg 32255119  T
Q  549 atgcccatgcactcaaatttttgcaaagttgagcatgacttccatggaggaagaatgcaataaactta 616  Q
    ||| |||||||||| ||| ||||||||||||| ||||| | |||||||||| |||||||||| |||||    
T  32255120 atgtccatgcactctaatatttgcaaagttgaacatgattcccatggaggaggaatgcaatagactta 32255187  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 32254664 - 32254729
Alignment:
Q  103 ggacatcattccatctcctcctcctcataccttatgggatggaaatttccaacctcttctctataagga 171  Q
    ||||| ||||||||| |||||||||| |||   |||||||||||||||||| |||||||||||||||||    
T  32254664 ggacaacattccatcccctcctcctcctac---atgggatggaaatttccaccctcttctctataagga 32254729  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 643 - 698
Target Start/End: Original strand, 32264478 - 32264533
Alignment:
Q  643 ctggcttatcaaatgtcacatggggctcaacacattatagtgctccgtgcggtcat 698  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||| |||||    
T  32264478 ctggcttatcaaatgtttctcggggctcaacacattatagtgctccgtgcagtcat 32264533  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 869 - 904
Target Start/End: Original strand, 32264762 - 32264797
Alignment:
Q  869 gataaaattataagatgcaaataattgcaagtaact 904  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264762 gataaaattataagatgcaaataattgcaagtaact 32264797  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 733 - 811
Target Start/End: Original strand, 32264597 - 32264675
Alignment:
Q  733 tgagcttcacaaactttcccctaaacatagactaacattaaggaagagagggccttggttgaatctacatcttttttat 811  Q
    |||||| |||||| |||||| |||||  |||| ||||||||||  ||||||| |||||||||||||||| ||| |||||    
T  32264597 tgagctacacaaattttcccttaaactaagaccaacattaagggggagagggacttggttgaatctacaacttgtttat 32264675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 626
Target Start/End: Original strand, 32248852 - 32248935
Alignment:
Q  545 tctaatgcccatgcactcaaatttttgcaaagttgagcatgacttccat--ggaggaagaatgcaataaacttattatagaatc 626  Q
    ||||||| |||||||||| || |||||||||||||| ||||| ||||||   ||||| |||||||||| |||| | ||||||||    
T  32248852 tctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaatc 32248935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 906 - 944
Target Start/End: Original strand, 32255881 - 32255919
Alignment:
Q  906 aatatgattaattgggctctcagagacaaacaagagttc 944  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  32255881 aataagattaattgggttctcagagacaaacaagagttc 32255919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 700
Target Start/End: Original strand, 32255415 - 32255472
Alignment:
Q  643 ctggcttatcaaatgtcacatggggctcaacacattatagtgctccgtgcggtcatta 700  Q
    |||||||||||||||||||  |||||||||||||||  | |||| | |||||||||||    
T  32255415 ctggcttatcaaatgtcaccaggggctcaacacattgcaatgctacatgcggtcatta 32255472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 820 - 873
Target Start/End: Original strand, 32255573 - 32255626
Alignment:
Q  820 aagggcaaacccagacacatacaatggaggggaccagctacacatacttgataa 873  Q
    ||||||| |||||||  ||||||||||| |||||||  ||||||||||||||||    
T  32255573 aagggcacacccagattcatacaatggatgggaccatatacacatacttgataa 32255626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 906 - 946
Target Start/End: Original strand, 28719574 - 28719614
Alignment:
Q  906 aatatgattaattgggctctcagagacaaacaagagttcat 946  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  28719574 aataagattaattgggctctcagagacaaacaagagttcat 28719614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 21847814 - 21847752
Alignment:
Q  346 ttttccttcatgaggttttatcttactagattttcttgataagatttttaacgaggcagttgt 408  Q
    ||||||||||| | ||||||||| | |||||||||||| |||| ||||||| |||||||||||    
T  21847814 ttttccttcatcaagttttatctcaatagattttcttgttaaggtttttaatgaggcagttgt 21847752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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