View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0859_low_21 (Length: 360)
Name: NF0859_low_21
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 28925328 - 28925486
Alignment:
| Q |
30 |
gaaattgtgaagataaaaaagtacatattgtttttaatatgaaacgaaggggacatgatgctatgattactactcctgttttgattataagagaaaattt |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925328 |
gaaattgtgaagataaaa--gtacatattgattttaatatgaaacgaaggggacatgatgctatgattactactcctgttttgattataagagaaaattt |
28925425 |
T |
|
| Q |
130 |
agttattagattcattcaataaataaataataaatctgatttatattataaactattaata |
190 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
28925426 |
agttattagattcattcattaaataaataatgaatctgatttatattataaacaattaata |
28925486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 28925516 - 28925596
Alignment:
| Q |
189 |
tatcttactatgaatgcttcatcacacaaccagtaatggacacaaaattaccaatttatatttatctaagaaaaaagtgat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
28925516 |
tatcttactatgaatgcttcatcacacaaccagtaatggacacaaaattaccaatttaaatttttctaagaaaaaagtgat |
28925596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 52168498 - 52168458
Alignment:
| Q |
113 |
attataagagaaaatttagttattagattcattcaataaat |
153 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
52168498 |
attataagagaaaatttacttttaagattcattcaataaat |
52168458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 43714176 - 43714136
Alignment:
| Q |
113 |
attataagagaaaatttagttattagattcattcaataaat |
153 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
43714176 |
attataagagaaaattcactttttagattcattcaataaat |
43714136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3158 times since January 2019
Visitors: 6171