View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_27 (Length: 330)
Name: NF0859_low_27
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 330
Target Start/End: Original strand, 46308750 - 46309074
Alignment:
| Q |
6 |
agcagcacagaaaattcgatggactacaacctcagcaggataacaatttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctc |
105 |
Q |
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| T |
46308750 |
agcaccacagaaaattggatggactacaacctcagcaggataacaacttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctc |
46308849 |
T |
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| Q |
106 |
tctttgactcagcatcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatt |
205 |
Q |
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| T |
46308850 |
tctttgactcagcatcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatt |
46308949 |
T |
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| Q |
206 |
tccataattatatataaccttaacaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcag |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46308950 |
tccataattatatataaccttaaaaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcag |
46309049 |
T |
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| Q |
306 |
aagcacttgttcctagatattagtt |
330 |
Q |
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| T |
46309050 |
aagcacttgttcctagatattagtt |
46309074 |
T |
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