View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_low_3 (Length: 628)

Name: NF0859_low_3
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_low_3
NF0859_low_3
[»] chr1 (3 HSPs)
chr1 (144-540)||(32730769-32731158)
chr1 (3-108)||(32731158-32731259)
chr1 (416-529)||(17405219-17405332)
[»] chr3 (4 HSPs)
chr3 (95-345)||(19597111-19597361)
chr3 (138-345)||(29099775-29099981)
chr3 (138-345)||(21934894-21935100)
chr3 (227-345)||(39644313-39644431)
[»] chr7 (6 HSPs)
chr7 (94-298)||(42935126-42935330)
chr7 (139-345)||(23601126-23601330)
chr7 (502-540)||(6214759-6214797)
chr7 (307-345)||(42935049-42935087)
chr7 (493-540)||(7704427-7704474)
chr7 (493-529)||(18132120-18132156)
[»] chr2 (3 HSPs)
chr2 (113-345)||(39244869-39245100)
chr2 (90-342)||(27967676-27967927)
chr2 (263-327)||(18945141-18945205)
[»] chr5 (1 HSPs)
chr5 (138-345)||(3529549-3529757)
[»] chr4 (5 HSPs)
chr4 (247-345)||(48661952-48662050)
chr4 (160-338)||(19838392-19838569)
chr4 (94-194)||(48662057-48662160)
chr4 (247-345)||(40250196-40250294)
chr4 (502-540)||(48104360-48104398)
[»] chr6 (1 HSPs)
chr6 (416-540)||(13698727-13698852)
[»] scaffold0394 (1 HSPs)
scaffold0394 (502-540)||(3472-3510)
[»] scaffold0160 (1 HSPs)
scaffold0160 (255-307)||(27376-27428)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 144 - 540
Target Start/End: Complemental strand, 32731158 - 32730769
Alignment:
Q  144 ttgtagcaagattattttaaataatttggaaaccttagtttaattttgtagtagggttattttaaacaatttaggcgccaatgtacaataataatttaga 243  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||    
T  32731158 ttgtagcaagatcattttaaataatttggaaaccttattttaattttgtagcagggttatcttaaacaatttagacgtcaatgtacaataataatttaga 32731059  T
Q  244 gaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacattttcaaa 343  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32731058 gaccgataccgatttagagtagtcattttggtctataaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacattttcaaa 32730959  T
Q  344 tgnnnnnnnnnnnnngaacaagccaaaataaaatgcaataataacaaaggcaaatcatcccacaaaaggacaaaggtgtgcaaagataacaaccccaaac 443  Q
    ||             |||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | ||||||    
T  32730958 tgttttttcttttttgaacaagccaaaatgaaatgcaataataacaaaggcaaatcatcccaca-------aaaggtgtgcaaagataacagctccaaac 32730866  T
Q  444 cagttacaatgtcacggatgccatataaacgaaggcatcattaaaaaacaacaataataattacaagtggacacccatacacaaaagaggatgtttc 540  Q
     |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32730865 aagttacaacgtcacggatgccataaaaatgaaggcatcattaaaaaacaacaataataattacaagtggacacccatacacaaaagaggatgtttc 32730769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 32731259 - 32731158
Alignment:
Q  3 catgtcgaaaaatatagaaaagtccttcacatatgatgaaaagataaggtgacaaggaaggaatcccttgtcttaagcctatgcatgggatcagtggcgt 102  Q
    ||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  32731259 catgtcgaataagagagaaaagtccttcacatatgaagaaaagataaggtgacaaggaa----tcccttgtcttaagcctatgcatgggatcagtggcgt 32731164  T
Q  103 agccat 108  Q
    ||||||    
T  32731163 agccat 32731158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 529
Target Start/End: Complemental strand, 17405332 - 17405219
Alignment:
Q  416 aaggtgtgcaaagataacaaccccaaaccagttacaatgtcacggatgccatataaacgaaggcatcattaaaaaacaacaataataattacaagtggac 515  Q
    |||||||||||||||||   | || ||  |||||||||| ||  ||||||||| || |||||||||||| || |||||||| |||||||||||  |||||    
T  17405332 aaggtgtgcaaagataaaggcacccaaaaagttacaatgccaatgatgccataaaagcgaaggcatcatcaagaaacaacagtaataattacacatggac 17405233  T
Q  516 acccatacacaaaa 529  Q
    |||||| |||||||    
T  17405232 acccatgcacaaaa 17405219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 95 - 345
Target Start/End: Complemental strand, 19597361 - 19597111
Alignment:
Q  95 agtggcgtagccatgaactttgagtagtgggggcaccacataaataaatttgtagcaagattattttaaataatttggaaaccttagtttaattttgtag 194  Q
    |||||||||||||  |||||||| |||| ||||||| | ||| |||||||||||||||| | || |||| |||||||||||||||| |||||||||| ||    
T  19597361 agtggcgtagccaaaaactttgaatagttggggcacaatatatataaatttgtagcaaggtcatcttaagtaatttggaaaccttattttaattttgaag 19597262  T
Q  195 tagggttattttaaacaatttaggcgccaatgtacaataataatttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgt 294  Q
     |||| ||  ||||||||||||| | |||| |||||||||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||||||    
T  19597261 cagggctaccttaaacaatttagacaccaaagtacaataataatttagagaccgatatcaatttggagtgatcattttagtctctaaatgtgtgatgtgt 19597162  T
Q  295 tatccctaaaatatttgaattttatcaaaactaagaacacattttcaaatg 345  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  19597161 tatcactaaaatatttgaattttatcaaaactatgaacacattttcaaatg 19597111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 138 - 345
Target Start/End: Complemental strand, 29099981 - 29099775
Alignment:
Q  138 ataaatttgtagcaagattattttaaataatttggaaaccttagtttaattttgtagtagggttattttaaacaatttaggcgccaatgtacaataataa 237  Q
    ||||||||||| || | | || ||||||||||||||||||||| ||||||||| ||| ||| |||| ||||||||||||  || | |||||||||| |||    
T  29099981 ataaatttgtaacatggtcatcttaaataatttggaaaccttattttaatttt-tagcaggattatcttaaacaatttaaacgtcgatgtacaatactaa 29099883  T
Q  238 tttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacatt 337  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||| |||| || |||||||||||||| ||||||||||||| ||||||||     
T  29099882 tttagagatcgataccgatttagaatagtcattttgatctctaaatatgtgatatgttttcactaaaatatttgaaatttatcaaaactatgaacacatc 29099783  T
Q  338 ttcaaatg 345  Q
    ||||||||    
T  29099782 ttcaaatg 29099775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 138 - 345
Target Start/End: Complemental strand, 21935100 - 21934894
Alignment:
Q  138 ataaatttgtagcaagattattttaaataatttggaaaccttagtttaattttgtagtagggttattttaaacaatttaggcgccaatgtacaataataa 237  Q
    ||||||||||| || | | || |||||||||||| ||||| || | |||||| |||| || || || ||||||||||||| |||| |||||||||| |||    
T  21935100 ataaatttgtatcagggtcatcttaaataatttgaaaaccctattctaattt-gtagcagagtcatcttaaacaatttagacgccgatgtacaatactaa 21935002  T
Q  238 tttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacatt 337  Q
    |||||||  ||||||||||||  | ||||||||||| ||||||||| ||||||| ||| || |||||||||||||| ||||||||| ||| ||||||||     
T  21935001 tttagaggtcgataccaatttgaattagtcattttgatctctaaatatgtgatgggttttcactaaaatatttgaaatttatcaaagctatgaacacatc 21934902  T
Q  338 ttcaaatg 345  Q
    ||||||||    
T  21934901 ttcaaatg 21934894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 227 - 345
Target Start/End: Complemental strand, 39644431 - 39644313
Alignment:
Q  227 tacaataataatttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaact 326  Q
    ||||||| ||||||||||  ||||||  ||||  |||||| |||||||||||||||||||||||||||| || ||||| ||||||| |||||||||||||    
T  39644431 tacaatattaatttagaggtcgatacatatttgaagtagttattttggtctctaaatgtgtgatgtgttttcactaaagtatttgatttttatcaaaact 39644332  T
Q  327 aagaacacattttcaaatg 345  Q
    | |||||| | ||||||||    
T  39644331 atgaacacttcttcaaatg 39644313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 94 - 298
Target Start/End: Complemental strand, 42935330 - 42935126
Alignment:
Q  94 cagtggcgtagccatgaactttgagtagtgggggcaccacataaataaatttgtagcaagattattttaaataatttggaaaccttagtttaattttgta 193  Q
    ||||||||||||||| |||||| |||||||||||||| | ||| | ||||||| |||||| | ||| ||||||||||||||| |||| ||||||||||||    
T  42935330 cagtggcgtagccataaactttaagtagtgggggcactatatataaaaatttgcagcaaggtcattgtaaataatttggaaatcttattttaattttgta 42935231  T
Q  194 gtagggttattttaaacaatttaggcgccaatgtacaataataatttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtg 293  Q
    | |||||||| ||||| ||||||| ||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||     
T  42935230 gcagggttatcttaaataatttagacgccaatttacaataataatttaaaaaccaataccaatttagagtagtcattttggtctctacatgtgtgatgtt 42935131  T
Q  294 ttatc 298  Q
    |||||    
T  42935130 ttatc 42935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 139 - 345
Target Start/End: Complemental strand, 23601330 - 23601126
Alignment:
Q  139 taaatttgtagcaagattattttaaataatttggaaaccttagtttaattttgtagtagggttattttaaacaatttaggcgccaatgtacaataataat 238  Q
    ||||||| ||||| | | || |||||||||||| ||||| || | |||||| |||| ||||| ||||||||||| |||| ||| | ||||||||| ||||    
T  23601330 taaatttctagcagggtcatcttaaataatttgaaaaccctattctaattt-gtagcagggtcattttaaacaacttagacgcga-tgtacaatattaat 23601233  T
Q  239 ttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacattt 338  Q
    |||||| |||||||  |||| ||||||| |||||| ||||||||| ||  ||||||| ||  ||||||||||||| ||||||||||||| |||||||| |    
T  23601232 ttagaggccgatactgatttggagtagttattttgatctctaaatatgctatgtgttttcagtaaaatatttgaaatttatcaaaactatgaacacatct 23601133  T
Q  339 tcaaatg 345  Q
    |||||||    
T  23601132 tcaaatg 23601126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 6214759 - 6214797
Alignment:
Q  502 aattacaagtggacacccatacacaaaagaggatgtttc 540  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6214759 aattacaagtggacacccatacacaaaagaggatgtttc 6214797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 42935087 - 42935049
Alignment:
Q  307 atttgaattttatcaaaactaagaacacattttcaaatg 345  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  42935087 atttgaattttatcaaaactatgaacacattttcaaatg 42935049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 540
Target Start/End: Complemental strand, 7704474 - 7704427
Alignment:
Q  493 aacaataataattacaagtggacacccatacacaaaagaggatgtttc 540  Q
    ||||| ||| ||||||||||||||||||||||||| ||||| ||||||    
T  7704474 aacaaaaatgattacaagtggacacccatacacaagagagggtgtttc 7704427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 18132120 - 18132156
Alignment:
Q  493 aacaataataattacaagtggacacccatacacaaaa 529  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  18132120 aacaaaaataattccaagtggacacccatacacaaaa 18132156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 113 - 345
Target Start/End: Complemental strand, 39245100 - 39244869
Alignment:
Q  113 tttgagtagtgggggcaccacataaataaatttgtagcaagattattttaaataatttggaaaccttagtttaattttgtagtagggttattttaaacaa 212  Q
    |||||||||||||| ||||| ||| ||||| |||||||||  | || ||||||||||| ||||| ||| ||||||||||||| || ||||| ||||||||    
T  39245100 tttgagtagtgggg-caccatatatataaagttgtagcaaagtcatcttaaataatttagaaactttattttaattttgtagcagtgttatcttaaacaa 39245002  T
Q  213 tttaggcgccaatgtacaataataatttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttga 312  Q
    ||||| || ||||||||||||||||||| |||| | ||| | |||| |||||||||||||||||| ||||||||||| ||||||||  ||||||||||||    
T  39245001 tttagacgtcaatgtacaataataatttggagatcaatatcgatttggagtagtcattttggtctttaaatgtgtgacgtgttatcattaaaatatttga 39244902  T
Q  313 attttatcaaaactaagaacacattttcaaatg 345  Q
    |||||||||||||||  ||||||||||||||||    
T  39244901 attttatcaaaactatcaacacattttcaaatg 39244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 27967676 - 27967927
Alignment:
Q  90 ggatcagtggcgtagccatgaactttgagtagtgggggcaccacataaataaatttgtagcaagattattttaaataatttggaaaccttagtttaattt 189  Q
    |||||||||||| |||||  || ||||| |||||||||||   |||| | |||||| ||||| | | || ||||||||||||||||| ||| | ||| ||    
T  27967676 ggatcagtggcggagccagaaattttgaatagtgggggcaatgcatacaaaaatttatagcagggtcatcttaaataatttggaaactttattctaactt 27967775  T
Q  190 tgtagtagggttattttaaacaatttaggcgccaatgtacaataataatttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtga 289  Q
      ||| ||||| || |||||||| |||| |||  || ||||||| ||||||||||   |||||| |||| ||||||||||||| ||||||||||||||||    
T  27967776 a-tagcagggtcatcttaaacaacttagacgctgatttacaatactaatttagaggttgatacctatttggagtagtcattttagtctctaaatgtgtga 27967874  T
Q  290 tgtgttatccctaaaatatttgaattttatcaaaactaagaacacattttcaa 342  Q
    |||||| || ||||||||||| |  ||  ||||||||| |||||||| |||||    
T  27967875 tgtgttttcactaaaatattttatattagtcaaaactacgaacacatcttcaa 27967927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 18945205 - 18945141
Alignment:
Q  263 tagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaacta 327  Q
    |||| |||||||| | ||||| ||| ||||||||||  ||| |||||||||||||||||||||||    
T  18945205 tagttattttggtttttaaatatgttatgtgttatcattaacatatttgaattttatcaaaacta 18945141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 138 - 345
Target Start/End: Complemental strand, 3529757 - 3529549
Alignment:
Q  138 ataaatttgtagcaagattattttaaataattt--ggaaaccttagtttaattttgtagtagggttattttaaacaatttaggcgccaatgtacaataat 235  Q
    |||||||||||||| | | ||||||||||||||  ||||||| || | |||||| |||| ||||| || ||||| ||||||| |||| || ||||||| |    
T  3529757 ataaatttgtagcagggtcattttaaataatttttggaaaccctattctaattt-gtagcagggtcatcttaaataatttagacgccgatatacaatatt 3529659  T
Q  236 aatttagagaccgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacaca 335  Q
    |||||||||  ||| ||| ||||||||||||||||||||||||||||||| ||||||||| || ||||| ||| |||| ||||||||||||| ||||| |    
T  3529658 aatttagaggtcgagaccgatttagagtagtcattttggtctctaaatgtttgatgtgttttcactaaagtatatgaaatttatcaaaactatgaacaaa 3529559  T
Q  336 ttttcaaatg 345  Q
    | ||||||||    
T  3529558 tcttcaaatg 3529549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 48662050 - 48661952
Alignment:
Q  247 cgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacattttcaaatg 345  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||    
T  48662050 cgataccgatttagagtagtcatttgggtctctaaatatgtgatgtgttatcactaaaatatttgaattttatcaaaactatgagcacatcttcaaatg 48661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 160 - 338
Target Start/End: Complemental strand, 19838569 - 19838392
Alignment:
Q  160 ttaaataatttggaaaccttagtttaattttgtagtagggttattttaaacaatttaggcgccaatgtacaataataatttagagaccgataccaattta 259  Q
    |||||||||||||||||| || | |||||| |||  ||| | || ||||||||||||| || | || |||| || ||| |||  |  ||||||| |||      
T  19838569 ttaaataatttggaaaccctattctaattt-gtatcaggttcatcttaaacaatttagacgtcgatatacagtactaacttaagggtcgataccgattag 19838471  T
Q  260 gagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacattt 338  Q
    || |||| |||||||||||||||||||||||||||| |  |||||| ||||||| |||||| ||||||  |||||||||    
T  19838470 gaatagttattttggtctctaaatgtgtgatgtgttttgactaaaacatttgaaatttatcgaaactacaaacacattt 19838392  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 48662160 - 48662057
Alignment:
Q  94 cagtggcgtagccatgaactttgagtagtgggggcaccacataaataaatttgtagca-ag--attattttaaataatttggaaaccttagtttaatttt 190  Q
    ||||||||||||||  |||||||| |||||||||||| | |||  ||||||||||||| ||  || || |||||||||||||||||| || |||||||||    
T  48662160 cagtggcgtagccagaaactttgaatagtgggggcactatatatgtaaatttgtagcagagtcatcatcttaaataatttggaaaccctattttaatttt 48662061  T
Q  191 gtag 194  Q
    ||||    
T  48662060 gtag 48662057  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 40250196 - 40250294
Alignment:
Q  247 cgataccaatttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaatatttgaattttatcaaaactaagaacacattttcaaatg 345  Q
    ||||||| ||||| || |||||||| |  |||||||| ||| |||||||||   |||||||||||||||||||| || ||| || ||||| ||||||||    
T  40250196 cgataccgatttaaagaagtcatttggcgctctaaatatgtaatgtgttattattaaaatatttgaattttatccaagctatgagcacatcttcaaatg 40250294  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 48104360 - 48104398
Alignment:
Q  502 aattacaagtggacacccatacacaaaagaggatgtttc 540  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  48104360 aattacaagtggacacccatacacaaaagcggatgtttc 48104398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 540
Target Start/End: Original strand, 13698727 - 13698852
Alignment:
Q  416 aaggtgtgcaaagataacaaccccaaaccagttacaatgtcacggatgccatataaacgaaggcatcattaa-aaaacaacaataataattacaagtgga 514  Q
    ||||||||||||||||| | | || ||  ||||||  |||||| ||||||| ||||  |  |||||||| || |||||||| | ||||||||||||||||    
T  13698727 aaggtgtgcaaagataaaagcacccaaaaagttactgtgtcactgatgccagataattgggggcatcataaacaaaacaacgaaaataattacaagtgga 13698826  T
Q  515 cacccatacacaaaagaggatgtttc 540  Q
    ||||||||||||  || |||||||||    
T  13698827 cacccatacacacgagcggatgtttc 13698852  T

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Target: scaffold0394 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 3510 - 3472
Alignment:
Q  502 aattacaagtggacacccatacacaaaagaggatgtttc 540  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  3510 aattacaagtggacacccatacacaaaagcgggtgtttc 3472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 27428 - 27376
Alignment:
Q  255 atttagagtagtcattttggtctctaaatgtgtgatgtgttatccctaaaata 307  Q
    |||| ||||||||||||| |||||||||| |||||| |||| || ||||||||    
T  27428 atttggagtagtcattttagtctctaaatatgtgatttgttttcactaaaata 27376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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