View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_low_38 (Length: 269)

Name: NF0859_low_38
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_low_38
NF0859_low_38
[»] chr4 (1 HSPs)
chr4 (20-105)||(50327820-50327905)
[»] chr3 (1 HSPs)
chr3 (20-105)||(4152554-4152639)
[»] chr8 (2 HSPs)
chr8 (38-105)||(19192832-19192899)
chr8 (38-105)||(33641747-33641814)
[»] chr6 (1 HSPs)
chr6 (38-105)||(26468048-26468115)
[»] chr7 (1 HSPs)
chr7 (38-89)||(33311496-33311547)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 50327905 - 50327820
Alignment:
Q  20 ctcaaataaaaccaacatgttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtccgctgctccttcctcc 105  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50327905 ctcaaataaaatcaacacgttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtccgctgctccttcctcc 50327820  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 4152554 - 4152639
Alignment:
Q  20 ctcaaataaaaccaacatgttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtccgctgctccttcctcc 105  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  4152554 ctcaaataaaatcaacacgttttctgttcctctccccctcaccgtccctctcttctccaccaatactgtccgctgctccttcctcc 4152639  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 19192899 - 19192832
Alignment:
Q  38 gttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtccgctgctccttcctcc 105  Q
    ||||||| |||||||||  ||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  19192899 gttttctcttcctctcctactcaccgcccctctctcttccaccaataccgtccgccgctccttcctcc 19192832  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 33641814 - 33641747
Alignment:
Q  38 gttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtccgctgctccttcctcc 105  Q
    ||||||| |||| ||||||||||  ||||||||||||||||||||||||||| || ||||||||||||    
T  33641814 gttttctcttcccctccccctcaatgtccctctctcctccaccaataccgtctgccgctccttcctcc 33641747  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 26468115 - 26468048
Alignment:
Q  38 gttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtccgctgctccttcctcc 105  Q
    ||||||| ||||||||| |||||||| ||||||||| ||||||||||||||| |  ||||||||||||    
T  26468115 gttttctcttcctctcctcctcaccgcccctctctcttccaccaataccgtctgtcgctccttcctcc 26468048  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 33311496 - 33311547
Alignment:
Q  38 gttttctgttcctctccccctcaccgtccctctctcctccaccaataccgtc 89  Q
    ||||||| ||||||||| ||||||||| |||| |||||||||||||||||||    
T  33311496 gttttctcttcctctcctcctcaccgttcctcactcctccaccaataccgtc 33311547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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