View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_4 (Length: 584)
Name: NF0859_low_4
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 30 - 575
Target Start/End: Original strand, 26607220 - 26607775
Alignment:
| Q |
30 |
ttaatcacactgcaaatgattctttatacattcacatacacacatatatgcg----------tgcgacagcccatgttggtccaattgttaaggagttca |
119 |
Q |
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| T |
26607220 |
ttaatcacactgcaaatgattctttatacattcacatacacacatatatgcacaaatatgcatgcgacaacccatgttgatccaattgttaaggagttca |
26607319 |
T |
|
| Q |
120 |
ctcatactattcaagaacgtgggttcaacttccactgccggcgtgagaatttcgtttgtcgataatttgtatgtgtctctatcatagctctcttaacctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26607320 |
ctcatactattcaagaacgtgggttcaacttccactgccggcgtgagaatttcgtttgtcgataatttgtatgtgtctctgtcatagctctcttaagctt |
26607419 |
T |
|
| Q |
220 |
gagaccggccctgaccatacccaaagacgcaaaattttaaccatgaacacaaaatttccaattcccttcatatattgtatcccctatatattttttcctg |
319 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26607420 |
gagaccggccctgacaatccccaaagacgcaaaattttaaccatgaacacaaaatttccaattcccttcatatattgtatcccctatatatttttttctg |
26607519 |
T |
|
| Q |
320 |
gtgtaacttgtggcacaaggaaatcttccttgaacttgtagaggaaggtgtgagcctgtaactggtgtcacctttctaaggcttgatccctttggtttcc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26607520 |
gtgtaacttgtggcacaaggaaatcttccttgaacttgtagaggaaggtgtgagcctgtaactggtgtcacctttctaaggcttgatccctttgatttcc |
26607619 |
T |
|
| Q |
420 |
taattagattctgatgaaatgtatattaggctaaaggaacttatcctaatcacctagcaattacattttggaatttctaagtttgaatgcttaaatgtca |
519 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26607620 |
taattagattctgatgaaatgtatattatgctaaaggaacttatcctaatcacctagcaattacattttggaatttctaattttgaatgcttaaatgtca |
26607719 |
T |
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| Q |
520 |
atttggacaagatattgaagcaatggaatattatactagtataagttaagtataat |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26607720 |
atttggacaagatattgaagcaatggaatattatactagtataagttaagtataat |
26607775 |
T |
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