View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_40 (Length: 267)
Name: NF0859_low_40
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 30013942 - 30013801
Alignment:
| Q |
1 |
ttgttgcttaagattctcatccgtaactaaggcatatgaaaagttgttttgagctgttttttcatgtttttgctctaaactagaagcaaattttatgtat |
100 |
Q |
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| T |
30013942 |
ttgttgcttaagattctcatcagtaactaaggcatgtgaaaagttgttttgagctgttttttcatgtttttgctctaaactagaagcaaactttccgtat |
30013843 |
T |
|
| Q |
101 |
ttcataagtactatttcgttgcaggtttcaatgttctgattt |
142 |
Q |
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| T |
30013842 |
ttcataagtactgtttcattgcaggtttcaatgttctgattt |
30013801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 30073526 - 30073386
Alignment:
| Q |
1 |
ttgttgcttaagattctcatccgtaactaaggcatatgaaaagttgttttgagctgttttttcatgtttttgctctaaactagaagcaaattttatgtat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
30073526 |
ttgttgcttaagattctcatcagtaactaaggcatgtgaaaagttgttttgagctgttttt-catgtttttgctctaaactagaagcaaactttctgtat |
30073428 |
T |
|
| Q |
101 |
ttcataagtactatttcgttgcaggtttcaatgttctgattt |
142 |
Q |
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| T |
30073427 |
ttcataagtactatttcattgcaggtttcaatgttctgattt |
30073386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 11225122 - 11225186
Alignment:
| Q |
155 |
gttgttcatgtaatataagagttacacattgttgataaaattctgcgagctgatgtttgatgtgta |
220 |
Q |
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| T |
11225122 |
gttgttcatgtagtataagagttacacattgttgat-aaattctgcgaactaatgtttgatgtgta |
11225186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 11224933 - 11224985
Alignment:
| Q |
155 |
gttgttcatgtaatataagagttacacattgttgataaaattctgcgagctgat |
208 |
Q |
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||||| |||||| |||||||||||||||||||||| || ||||||||| ||||| |
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| T |
11224933 |
gttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgat |
11224985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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