View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_47 (Length: 251)
Name: NF0859_low_47
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_47 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 4562584 - 4562820
Alignment:
| Q |
13 |
aatattaaaagaaaaattactgctttatattctactattattaacaagaattacttgttaaaaagtttcatattctacaaaaattgataaaacattatat |
112 |
Q |
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| T |
4562584 |
aatattaaaagaaaaattactgctttatattctactattattaacaagaattacttgttaaaaagtttcatattctactaaaattgataaaacattatat |
4562683 |
T |
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| Q |
113 |
aaaattaatattttctcagcaaaaagattgaattggttgattctgttatgaaaatcattagcttaattattttggtgtaaattggatattctctgtgcgc |
212 |
Q |
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| T |
4562684 |
aaaattaatattttctcagc-aaaatattgaattggttgattctcttatgaaaatcattagcttaattatttt-gtgtaaatcggatattctctatgcgc |
4562781 |
T |
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| Q |
213 |
aactgaagacactaatctctcgaacattgtgagacttaa |
251 |
Q |
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| T |
4562782 |
aactgcagacactaatctctcaaacattgtgagacttaa |
4562820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 13948567 - 13948629
Alignment:
| Q |
182 |
ttttggtgtaaattggatattctctgtgcgcaactgaagacactaatctctcgaacattgtgaga |
246 |
Q |
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| T |
13948567 |
ttttggtgtaaattggatat--tccgcgcgcaactgcagagactaatccctcgagcattgtgaga |
13948629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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