View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_low_5 (Length: 563)

Name: NF0859_low_5
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_low_5
NF0859_low_5
[»] chr2 (3 HSPs)
chr2 (104-457)||(43368729-43369082)
chr2 (103-317)||(43364721-43364935)
chr2 (517-550)||(43368624-43368657)
[»] chr3 (1 HSPs)
chr3 (103-214)||(24618134-24618245)
[»] chr8 (2 HSPs)
chr8 (270-307)||(11368002-11368039)
chr8 (167-209)||(11367227-11367269)
[»] chr7 (1 HSPs)
chr7 (279-307)||(29388524-29388552)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 104 - 457
Target Start/End: Complemental strand, 43369082 - 43368729
Alignment:
Q  104 tttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43369082 tttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcca 43368983  T
Q  204 agaagaaaaaagaattacttgaagggcctcaaaggataaagaagaatgttgatgttgaagaagatcaacgttcacttgatgaccttttgtcttttattaa 303  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43368982 agaagaaaaaacaattacttgaagggcctcaaaggataaagaagaatgttgatgttgaagaagatcaacgttcacttgatgaccttttgtcttttattaa 43368883  T
Q  304 tggagattcgaaggggattgaaactattggtaagaatnnnnnnnnnnnnnnnnnnngccagcataagaagaatgtgaaggttaacgtcggtcataacaac 403  Q
    |||||||||||||||||||||||||||||||||||||                   |||||||||| |||||||||||||||||||||||||||||||||    
T  43368882 tggagattcgaaggggattgaaactattggtaagaataaaaagaagaagaaaaaaggccagcataaaaagaatgtgaaggttaacgtcggtcataacaac 43368783  T
Q  404 atcaaacaccaaagttcggaagtagataaactgtgtgagacctcaaatttacac 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43368782 atcaaacaccaaagttcggaagtagataaactgtgtgagacctcaaatttacac 43368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 103 - 317
Target Start/End: Complemental strand, 43364935 - 43364721
Alignment:
Q  103 atttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcc 202  Q
    ||||| |||| ||||||||||||| |||||||||||||| |||||| |  ||||  ||||| | || ||||| ||||||||||||||||| |||||||||    
T  43364935 atttcgtgtgcctgatgatcttaccgaggaagagaaattggagcccttgttaaacatcactgatgacccaagcatcaggcttttgaaccgcttgtatgcc 43364836  T
Q  203 aagaagaaaaaagaattacttgaagggcctcaaaggataaagaagaatgttgatgttgaagaagatcaacgttcacttgatgaccttttgtcttttatta 302  Q
    ||||||| || |||| ||||| ||| || | |||| |||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  43364835 aagaagagaagagaactacttaaagagcgtgaaagcataaagaagaatgttgatgttgaagaagatgaacgttcagttgacgaccttctgtcttttatta 43364736  T
Q  303 atggagattcgaagg 317  Q
    |||| ||| ||||||    
T  43364735 atggtgatccgaagg 43364721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 550
Target Start/End: Complemental strand, 43368657 - 43368624
Alignment:
Q  517 ggctttaaaagcaaaaatgaatagggaagtagaa 550  Q
    ||||||||||||||||||||||||||||||||||    
T  43368657 ggctttaaaagcaaaaatgaatagggaagtagaa 43368624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 24618134 - 24618245
Alignment:
Q  103 atttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcc 202  Q
    ||||||| || ||||||||||||  |||||||||||||| ||||  ||  ||||  | |||  ||||||||||||||||||| ||||| | ||||||||     
T  24618134 atttcatttgcctgatgatcttatggaggaagagaaattggagcagatgttaaacataacttgcgatccaagtatcaggcttatgaactgcttgtatgca 24618233  T
Q  203 aagaagaaaaaa 214  Q
    ||||||| ||||    
T  24618234 aagaagagaaaa 24618245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 11368002 - 11368039
Alignment:
Q  270 aacgttcacttgatgaccttttgtcttttattaatgga 307  Q
    |||||||| |||||||||||||||||||||||||||||    
T  11368002 aacgttcagttgatgaccttttgtcttttattaatgga 11368039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 11367227 - 11367269
Alignment:
Q  167 gatccaagtatcaggcttttgaaccgattgtatgccaagaaga 209  Q
    |||||||| || |||||||||||||| ||||||||||||||||    
T  11367227 gatccaaggataaggcttttgaaccgcttgtatgccaagaaga 11367269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 29388552 - 29388524
Alignment:
Q  279 ttgatgaccttttgtcttttattaatgga 307  Q
    |||||||||||||||||||||||||||||    
T  29388552 ttgatgaccttttgtcttttattaatgga 29388524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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