View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_7 (Length: 550)
Name: NF0859_low_7
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_7 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 159 - 542
Target Start/End: Original strand, 6307913 - 6308297
Alignment:
| Q |
159 |
tatagagaagtaataaggtacacttgaacatggagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataa |
258 |
Q |
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| T |
6307913 |
tatagagaaataataaggtacacttgaacatggagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataa |
6308012 |
T |
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| Q |
259 |
tttcttgggtaacctcttctctgaaaacctcaacaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttac |
358 |
Q |
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| T |
6308013 |
tttcttgggtaacctcttctctgaaaacctcaacaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttac |
6308112 |
T |
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| Q |
359 |
cctttgatttccattagaggccaggctgactttattatcaactaaatcacaagaaaccattaccggttatgcatacctcactcttatttcctttcactct |
458 |
Q |
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| T |
6308113 |
cctttgatttccattagaggccaggctgactttattatcaa-taaatcacaaaaaaccattaccggttatgcatacctcactcttatttcctttcactct |
6308211 |
T |
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| Q |
459 |
aat--acctcatcttttaatatgatttaagtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatc |
542 |
Q |
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| T |
6308212 |
aatacacctcctcttttaatatgatttaagtcccttaaattcaattgattgccttgattccatactatgacttgaatagaaaaatc |
6308297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 6307843 - 6307913
Alignment:
| Q |
53 |
ggccatcacttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgattatat |
123 |
Q |
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| T |
6307843 |
ggccatcacttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgattatat |
6307913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 387 - 542
Target Start/End: Original strand, 107375 - 107529
Alignment:
| Q |
387 |
actttattatcaactaaatcacaagaaaccattaccggttatgcatacctcactcttatttcctttcactctaatacctcatcttttaatatga-tttaa |
485 |
Q |
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|||||||| |||| ||||||||||||| |||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||||| |
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| T |
107375 |
actttattctcaa-taaatcacaagaagccattagcggttgtgcatacctcacttttatttcttttcactctaatacctca-ctcttaatatgattttaa |
107472 |
T |
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| Q |
486 |
gtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatc |
542 |
Q |
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| T |
107473 |
gtcccttaaaatcaattgattgccttgattccatactataacttgaatagaaaaatc |
107529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 29451237 - 29451348
Alignment:
| Q |
432 |
tacctcactcttatttcctttcactctaatacctcatcttttaatatga-tttaagtcccttaaattcaattgaccgccttgattccatactatgacttg |
530 |
Q |
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|||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||||||||||||| | |
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| T |
29451237 |
taccccacttttattccctttcactctaatacctcatcttttaatatgattttaagtcccttaaaatcaattggttgccttaactccatactatgactgg |
29451336 |
T |
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| Q |
531 |
aatagaataatc |
542 |
Q |
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| T |
29451337 |
aatagaagaatc |
29451348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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