View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0859_low_8 (Length: 481)
Name: NF0859_low_8
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 12615769 - 12616000
Alignment:
| Q |
76 |
ccaacaatataggggggaccaaataaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattca |
175 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12615769 |
ccaacaaaataggggggaccaaatgaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattca |
12615868 |
T |
|
| Q |
176 |
tatcatatttgttcaagacatgttgtcaccctgatt---nnnnnnncaagcagtttataccgtcattgttcatgata--gtatagtaaaccaagcatgca |
270 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12615869 |
tatcatatttcttcaagacatgttgtcaccctgattaaaaaaaaaccaagcagtttataccgtcattgttcatgatagtgtatactaaaccaagcatgca |
12615968 |
T |
|
| Q |
271 |
ataaatgcaaaagatttggccaatgatatatt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12615969 |
ataaatgcaaaagatttggccaatgatatatt |
12616000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 12616034 - 12616150
Alignment:
| Q |
336 |
taacttgcacatacctgaagtttgatgaatcattaggaatagaaggagcattggcattgagaagaagatattccacctcacccatgtctccattgaaccc |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12616034 |
taacttgcacatacctgaagtttgatgaatcattaggaatagaaggagcattggcattgagaagaagatattccacctcacccatgtctccattgaaccc |
12616133 |
T |
|
| Q |
436 |
aatattcttgcatccat |
452 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12616134 |
aatattcttgcatccat |
12616150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 115 times since January 2019
Visitors: 6125