View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_low_9 (Length: 469)
Name: NF0859_low_9
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 30409691 - 30409818
Alignment:
| Q |
143 |
tcgtatagaaggacaatactagctcatcgattgaagcaatgaaattagctcacaagttttgttaacaagacccaagtaggatcaaattgataagttttaa |
242 |
Q |
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| T |
30409691 |
tcgtatagaaggacaatact----catcgagtgaagcaatgaaattagctcacaagttttgttaacaagacccaagtaggatcaaattgataagttttaa |
30409786 |
T |
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| Q |
243 |
agttaagggaaccaaagaagtatttaggtctt |
274 |
Q |
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| T |
30409787 |
agttaagggaaccaaaaaagtatttaggtctt |
30409818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 30409922 - 30409974
Alignment:
| Q |
379 |
tttctttaattattggtcctctaaacactctaatatcaattttagtctctgct |
431 |
Q |
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| T |
30409922 |
tttctttaattattggtcctctaaacactctaatatcaattttagtctctgct |
30409974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 30423347 - 30423408
Alignment:
| Q |
101 |
attactcaccagcaaacgcaaaatatctcaagtcatggatgctcgtatagaaggacaatact |
162 |
Q |
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| T |
30423347 |
attactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatact |
30423408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 30412193 - 30412282
Alignment:
| Q |
101 |
attactcaccagcaaacgcaaaatatctcaagtcatggatgctcgtatagaaggacaatactagctcatcgattgaagcaatgaaattagctca |
194 |
Q |
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| T |
30412193 |
attactcaacaacaaacataaaatctctcaagttatggatgttcgtatagaaggtgaata----ctcatcgcgtgatgcaatgaaattagctca |
30412282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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