View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0860_high_1 (Length: 422)
Name: NF0860_high_1
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0860_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 48230335 - 48230150
Alignment:
| Q |
29 |
aggatgctcatggtgatgggagtgaaattcccagagtttagcacagagatttcttgcagagagtgtttttgaagtgggaaagttgaggaactgttgttgt |
128 |
Q |
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| T |
48230335 |
aggatgctcatggtggtgggagtgaaattcccagagtttagcacagagatttcttgcagagagtgtttttgaagtgggaaagttgaggaactgttgttgt |
48230236 |
T |
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| Q |
129 |
tgggaagaaggaaagtcaacaagtctccaagtgggtggtggtgttgaacttgaagaccttcctcttcctcctctcttctccacaag |
214 |
Q |
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| T |
48230235 |
tgggaagaaggaaagtcaacaagtctccaagtgggtggtggtgttgaacttgaagaccttcctcttcctcctctcttctccacaag |
48230150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 309 - 416
Target Start/End: Complemental strand, 48230055 - 48229948
Alignment:
| Q |
309 |
aaaaaacattcaaagtgttttgtgtttgaaagttgagagtaccgtgtgtcatgaagtagaaagaatattaacctgttaagtaagttacaaactcagcttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230055 |
aaaaaacattcaaagtgttttgtgtttgaaagttgagagtgccgtgtgtcatgaagtagaaagaatattaacctgttaagtaagttacaaactcagcttt |
48229956 |
T |
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| Q |
409 |
catctcac |
416 |
Q |
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| T |
48229955 |
cttctcac |
48229948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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