View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0860_high_5 (Length: 327)

Name: NF0860_high_5
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0860_high_5
NF0860_high_5
[»] chr3 (17 HSPs)
chr3 (77-314)||(26537481-26537721)
chr3 (2-78)||(26537764-26537840)
chr3 (108-208)||(27661303-27661404)
chr3 (109-215)||(27662394-27662500)
chr3 (109-212)||(3149434-3149539)
chr3 (110-208)||(27329029-27329127)
chr3 (108-193)||(1677172-1677257)
chr3 (109-222)||(39870615-39870728)
chr3 (120-222)||(3149811-3149915)
chr3 (109-192)||(13645043-13645126)
chr3 (263-313)||(33551651-33551704)
chr3 (109-179)||(27361399-27361469)
chr3 (119-188)||(34594455-34594524)
chr3 (120-190)||(3026666-3026737)
chr3 (120-190)||(39871930-39872001)
chr3 (254-292)||(34594321-34594359)
chr3 (254-313)||(34595706-34595768)
[»] chr5 (1 HSPs)
chr5 (109-238)||(33489683-33489812)
[»] chr7 (14 HSPs)
chr7 (108-204)||(19639752-19639848)
chr7 (109-222)||(38758100-38758214)
chr7 (107-225)||(5974311-5974429)
chr7 (2-70)||(5974506-5974574)
chr7 (120-222)||(38756826-38756930)
chr7 (254-313)||(20208393-20208455)
chr7 (119-193)||(44815890-44815964)
chr7 (108-193)||(5975439-5975524)
chr7 (166-243)||(19638679-19638756)
chr7 (109-187)||(41592978-41593056)
chr7 (110-222)||(30045948-30046061)
chr7 (109-152)||(20207933-20207976)
chr7 (254-292)||(20207769-20207807)
chr7 (254-294)||(5974255-5974295)
[»] chr4 (6 HSPs)
chr4 (110-222)||(11148512-11148625)
chr4 (104-222)||(34538292-34538413)
chr4 (109-222)||(34539581-34539695)
chr4 (108-188)||(2671736-2671816)
chr4 (108-193)||(20946050-20946135)
chr4 (254-294)||(4284319-4284359)
[»] chr8 (4 HSPs)
chr8 (104-208)||(44690225-44690328)
chr8 (254-308)||(44690093-44690150)
chr8 (120-208)||(27411005-27411093)
chr8 (108-193)||(7274436-7274521)
[»] chr1 (11 HSPs)
chr1 (104-188)||(9419570-9419654)
chr1 (109-212)||(13223089-13223193)
chr1 (104-208)||(27524474-27524578)
chr1 (104-204)||(12097709-12097809)
chr1 (120-222)||(40767787-40767891)
chr1 (104-216)||(13229046-13229161)
chr1 (104-208)||(28253383-28253488)
chr1 (119-194)||(37401220-37401296)
chr1 (104-192)||(12096070-12096158)
chr1 (104-179)||(37402399-37402474)
chr1 (109-201)||(35381567-35381659)
[»] chr6 (1 HSPs)
chr6 (108-215)||(1134317-1134423)
[»] chr2 (11 HSPs)
chr2 (104-216)||(44904700-44904817)
chr2 (104-222)||(28165822-28165943)
chr2 (109-212)||(28167107-28167213)
chr2 (109-183)||(31559312-31559386)
chr2 (254-294)||(31559486-31559526)
chr2 (108-180)||(30547820-30547892)
chr2 (109-184)||(44905952-44906028)
chr2 (109-187)||(43517852-43517930)
chr2 (257-313)||(9262825-9262884)
chr2 (108-188)||(5696154-5696234)
chr2 (258-309)||(31558021-31558075)
[»] scaffold0517 (2 HSPs)
scaffold0517 (119-194)||(6780-6856)
scaffold0517 (104-179)||(5602-5677)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 77 - 314
Target Start/End: Complemental strand, 26537721 - 26537481
Alignment:
Q  77 agagtaagaacaaagagagnnnnnnnnttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggtt 176  Q
    |||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  26537721 agagtaagaacaaagagagagaaaaaattgggttttaaattgtaaaatttgatgattacgttttttaatttcatccttatttaaatatgtgtttttgatt 26537622  T
Q  177 ttagtccctctactaacaccagttgtcatctcatcaagtgacacgtgtgcctccgttggccaccaaannnnnnnnnnaacggaagttgacgttagggacc 276  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||          || ||||||||||||||||||||    
T  26537621 ttagtccctctactaacaccaattgtcatctcatcaagtgacatgtgtgcctccgttggccatcaaaacttttttttaatggaagttgacgttagggacc 26537522  T
Q  277 aattccaaaaagtt---aagatacaagggctgtttcgcaat 314  Q
    ||||||||||||||   |||||||||||| |||||||||||    
T  26537521 aattccaaaaagttaagaagatacaagggttgtttcgcaat 26537481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 26537840 - 26537764
Alignment:
Q  2 catcacatgatcaacacttggggaaaataaattgtccaatatatacattgttgaagaaaataagtttttgcttttag 78  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  26537840 catcacatgatcaacacttggggaaaataacttgtccaatatatacattgttgaaggaaacaagattttgcttttag 26537764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 27661404 - 27661303
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttt-tttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatc 206  Q
    |||||||||| |||||||| |||||||| ||| |||||||||| || ||| |||||| ||||| || |||||||||||||||||||||||||||||||||    
T  27661404 gttttaaatttcaaaattttatgattacatttctttaatttcacccctatgtaaatatgtgttatttgttttagtccctctactaacaccagttgtcatc 27661305  T
Q  207 tc 208  Q
    ||    
T  27661304 tc 27661303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 27662394 - 27662500
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatct 207  Q
    ||||||||| ||||||||||| |||| ||||||| |||||| ||||  | |||||| | |||||| ||||||||||||||||||| |||| ||| |||||    
T  27662394 ttttaaatttcaaaatttgataattatgtttttttaatttcgtcctc-tgtaaatatgcgtttttagttttagtccctctactaagaccaattgccatct 27662492  T
Q  208 catcaagt 215  Q
    ||||||||    
T  27662493 catcaagt 27662500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 3149539 - 3149434
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgtttttt--aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatc 206  Q
    ||||||||| |||||||||||||||| |||||||  |||||| ||| ||| |||| | | || ||||||||||||||||||||||| ||||| || || |    
T  3149539 ttttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcgtctttggttttagtccctctactaagaccagctgccaac 3149440  T
Q  207 tcatca 212  Q
    ||||||    
T  3149439 tcatca 3149434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 27329127 - 27329029
Alignment:
Q  110 tttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctc 208  Q
    |||||| | |||||||||||| ||| ||||||||||||||||| ||| |||||  ||||||||||||||||||| | || |||||| | || |||||||    
T  27329127 tttaaaattcaaaatttgatgtttaggttttttaatttcatccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctc 27329029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 1677257 - 1677172
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaac 193  Q
    |||||||| | |||| |||||||||||||||||||| |||| ||| ||| |||||  | |||||||||||||||||||||| ||||    
T  1677257 gttttaaaattcaaattttgatgattacgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaataac 1677172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 39870728 - 39870615
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctc 208  Q
    ||||||| | ||||| |||||||||||||||||||||| ||||| ||| |||| |   ||||||| |||||||||||||| | | |||||||| ||| ||    
T  39870728 ttttaaaattcaaaaattgatgattacgttttttaattacatccctatgtaaaaatacgtttttgattttagtccctctaattaaaccagttgccatatc 39870629  T
Q  209 atcaagtgacacgt 222  Q
    | |||||| |||||    
T  39870628 agcaagtgccacgt 39870615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 3149811 - 3149915
Alignment:
Q  120 aaaatttgatgattacgtttttt-aatttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctcatcaagtga 217  Q
    ||||||||||||||||||||||| ||||||| ||| ||| |||| | | |||||| ||||| |||||||||| || | ||| |||||||||||||||||     
T  3149811 aaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgtttttgtccctctaccaagagcagctgtcatctcatcaagtgc 3149910  T
Q  218 cacgt 222  Q
    |||||    
T  3149911 cacgt 3149915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 13645126 - 13645043
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaa 192  Q
    ||||| ||| |||| |||||| |||| |||||||| |||| ||| ||| |||||  | ||||||||||||||||||||||||||    
T  13645126 ttttacatttcaaattttgattattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctactaa 13645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 33551704 - 33551651
Alignment:
Q  263 tgacgttagggaccaattccaaaaagtt---aagatacaagggctgtttcgcaa 313  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  33551704 tgacgttagggatcaattccaaaaagttaagaagatacaagggctgtttcgcaa 33551651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 27361469 - 27361399
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggtttta 179  Q
    ||||||| | |||||||||||  ||| ||||||||||||||||| ||| |||||  |||||||||||||||    
T  27361469 ttttaaaattcaaaatttgatatttaggttttttaatttcatccctatgtaaatttgtgtttttggtttta 27361399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 34594524 - 34594455
Alignment:
Q  119 caaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctcta 188  Q
    |||||||  ||||||| ||||||||||||||||| ||| |||||    ||||||||||||||||||||||    
T  34594524 caaaattcaatgattatgttttttaatttcatccctatgtaaatttccgtttttggttttagtccctcta 34594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 3026666 - 3026737
Alignment:
Q  120 aaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctact 190  Q
    |||| |||||| ||||||||||| |||| ||||| ||| |||| |  |||||||||||||||||||||||||    
T  3026666 aaaaattgatgtttacgtttttttaattacatccctatgtaaaaatatgtttttggttttagtccctctact 3026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 39871930 - 39872001
Alignment:
Q  120 aaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctact 190  Q
    |||| |||||| ||||||||||| |||| ||||| ||| |||| |  |||||||||||||||||||||||||    
T  39871930 aaaaattgatgtttacgtttttttaattacatccctatgtaaaaatatgtttttggttttagtccctctact 39872001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 34594359 - 34594321
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagttaa 292  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  34594359 aacggaagattacgttagggaccaattccaaaaagttaa 34594321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 34595706 - 34595768
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagtt---aagatacaagggctgtttcgcaa 313  Q
    |||| ||||||| |||||||||||||| ||||| |||   |||||||||||| ||||||||||    
T  34595706 aacgaaagttgatgttagggaccaatttcaaaaggttaacaagatacaagggttgtttcgcaa 34595768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 33489683 - 33489812
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctc 208  Q
    ||||||||| |||||||||||||||| ||||||||||| | ||| ||| |||| | | ||||||||| |||||||||||||||| |||||||| || |||    
T  33489683 ttttaaatttcaaaatttgatgattatgttttttaattccgtccctatgtaaaaatgcgtttttggtattagtccctctactaagaccagttgccaactc 33489782  T
Q  209 atcaagtgacacgtgtgcctccgttggcca 238  Q
    |||||||| ||| | ||| |||||| ||||    
T  33489783 atcaagtgccacatatgcgtccgttagcca 33489812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 19639752 - 19639848
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtca 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||| | | |||||| |||||| |||||||||||||| | |||||||    
T  19639752 gttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaacatgcgttttttgttttaatccctctactaacaacggttgtca 19639848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 38758100 - 38758214
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgtttt-ttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatct 207  Q
    ||||||||| |||||||||||||||| ||||| |||||||| ||| ||| |||| | |||||||||||||||||||||||||||| |||||||| ||  |    
T  38758100 ttttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagaccagttgccaatt 38758199  T
Q  208 catcaagtgacacgt 222  Q
    ||||| ||| |||||    
T  38758200 catcatgtgccacgt 38758214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 5974429 - 5974311
Alignment:
Q  107 ggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatc 206  Q
    ||||||||||| |||| ||||||||||| |||||||||||| |||| | | |||||  ||||||||  |||||||| ||||||||||||||  |  ||||    
T  5974429 ggttttaaatttcaaactttgatgattatgttttttaattttatccctgtgtaaatttgtgttttttattttagtcgctctactaacaccatataccatc 5974330  T
Q  207 tcatcaagtgacacgtgtg 225  Q
    ||||||||||||| |||||    
T  5974329 tcatcaagtgacatgtgtg 5974311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 5974574 - 5974506
Alignment:
Q  2 catcacatgatcaacacttggggaaaataaattgtccaatatatacattgttgaagaaaataagttttt 70  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||    
T  5974574 catcacaggatcaacacttggggcaaataacttgtccaatatatacattgttgaaggaaatgagttttt 5974506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 38756930 - 38756826
Alignment:
Q  120 aaaatttgatgattacgtttttt-aatttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctcatcaagtga 217  Q
    ||||||||||||||||||||||| ||||| | ||| ||| |||| | |||||||| ||||||||||||||||||| | ||||||  |||||||||||||     
T  38756930 aaaatttgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagttgcaatctcatcaagtgc 38756831  T
Q  218 cacgt 222  Q
    |||||    
T  38756830 cacgt 38756826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 20208393 - 20208455
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagttaa---gatacaagggctgtttcgcaa 313  Q
    |||||||||||||||||||||||||||||||||| ||||   |||||||||| ||||||||||    
T  20208393 aacggaagttgacgttagggaccaattccaaaaatttaacatgatacaagggttgtttcgcaa 20208455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 44815890 - 44815964
Alignment:
Q  119 caaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaac 193  Q
    ||||| ||||| ||||| ||||||||||| |||||||| |||| | | |||||||||||||| ||||||||||||    
T  44815890 caaaaattgattattactttttttaatttaatccttatgtaaaaatgcgtttttggttttagcccctctactaac 44815964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 5975439 - 5975524
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaac 193  Q
    ||||||||||  ||| ||||||||||| ||||||||||||| ||| ||| |||||  |  ||||| ||||||||||||||||||||    
T  5975439 gttttaaattttaaattttgatgattatgttttttaatttcgtccctatgtaaatttgcattttttgttttagtccctctactaac 5975524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 19638756 - 19638679
Alignment:
Q  166 tgtttttggttttagtccctctactaacaccagttgtcatctcatcaagtgacacgtgtgcctccgttggccaccaaa 243  Q
    ||||||| ||||||||||||||||||| |||||||  ||||| |||||||| ||||| ||| || ||| |||||||||    
T  19638756 tgttttttgttttagtccctctactaagaccagttaccatcttatcaagtgtcacgtatgcgtctgttagccaccaaa 19638679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 41592978 - 41593056
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctct 187  Q
    ||||||| | |||||||||||| |||| |||||||||||||||| ||| | |||    |||||||||||||||||||||    
T  41592978 ttttaaaattcaaaatttgatgtttactttttttaatttcatccctatgtcaattttcgtttttggttttagtccctct 41593056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 30046061 - 30045948
Alignment:
Q  110 tttaaattgcaaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctc 208  Q
    |||||||| ||||||||||| ||||  |||||| |||||| ||| ||| |||| |   |||||||||||||||||||||||||| |  ||||| || |||    
T  30046061 tttaaattccaaaatttgattattatatttttttaatttcgtccctatgtaaaaatacgtttttggttttagtccctctactaagattagttggcaactc 30045962  T
Q  209 atcaagtgacacgt 222  Q
    |||| ||| |||||    
T  30045961 atcatgtgccacgt 30045948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 20207976 - 20207933
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatcc 152  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  20207976 ttttaaatttcaaaattagatgattacattttttaatttcatcc 20207933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 20207807 - 20207769
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagttaa 292  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  20207807 aacggaagttgacgttagggaccaattttaaaaagttaa 20207769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 5974295 - 5974255
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagttaaga 294  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  5974295 aacggaagttgatgttatggaccaatttcaaaaagttaaga 5974255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 11148625 - 11148512
Alignment:
Q  110 tttaaattgcaaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctc 208  Q
    |||||||| |||||||||||||||| ||||||| |||||| ||| ||| |||| | |||||||||||||||||||||||||||| | |||||| || |||    
T  11148625 tttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagatcagttgccaactc 11148526  T
Q  209 atcaagtgacacgt 222  Q
    |||| ||| |||||    
T  11148525 atcatgtgccacgt 11148512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 34538413 - 34538292
Alignment:
Q  104 ttgggttttaaattgcaaaa-tttgatgattacgtttttt-aatttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccagtt 200  Q
    |||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||| ||| |||| | | |||||| ||||||||||||||||||| | |||||    
T  34538413 ttgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgttttagtccctctactaagagcagtt 34538314  T
Q  201 gtcatctcatcaagtgacacgt 222  Q
    | |||||||||||||| |||||    
T  34538313 gccatctcatcaagtgccacgt 34538292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 34539581 - 34539695
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgtttttt--aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatc 206  Q
    ||||||||| |||||||||||||||| |||||||  |||||| ||| ||| |||| | |  |||||| |||||||||||||||||| |||||||| || |    
T  34539581 ttttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcttttttg-ttttagtccctctactaagaccagttgccaac 34539679  T
Q  207 tcatcaagtgacacgt 222  Q
    |||||| ||| |||||    
T  34539680 tcatcatgtgtcacgt 34539695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 2671816 - 2671736
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctcta 188  Q
    |||||||| | |||| ||||||||||| |||||||| |||| ||| ||| |||||  | ||||||||||||||||||||||    
T  2671816 gttttaaaattcaaattttgatgattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 2671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 20946135 - 20946050
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaac 193  Q
    |||||||| | |||| |||||||||||  ||||||| |||| ||| | | |||||  |||||||||||||||||||||||| ||||    
T  20946135 gttttaaaattcaaattttgatgattatattttttattttcgtccctgtgtaaatttgtgtttttggttttagtccctctaataac 20946050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 4284319 - 4284359
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagttaaga 294  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  4284319 aacggaacctgatgttagggaccaattccaaaaagttaaga 4284359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 44690328 - 44690225
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtc 203  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||| | ||||| || || ||    
T  44690328 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatc 44690230  T
Q  204 atctc 208  Q
    |||||    
T  44690229 atctc 44690225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 44690150 - 44690093
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagtt---aagatacaagggctgttt 308  Q
    |||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||    
T  44690150 aacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttt 44690093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 27411005 - 27411093
Alignment:
Q  120 aaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctc 208  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||  |||||||| |||||||||| | || |||||| | || |||||||    
T  27411005 aaaatttgatgtttaggttttttaatttcatccctatgtaaatttgtgtttttagttttagtccttgtattaacactacttatcatctc 27411093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 7274436 - 7274521
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaac 193  Q
    |||||||| | |||| ||||||||||| |||||||| |||||||| ||| |||||  |  ||||||||||||||| ||||| ||||    
T  7274436 gttttaaaattcaaattttgatgattatgttttttattttcatccctatgtaaatttgcatttttggttttagtctctctaataac 7274521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 9419570 - 9419654
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctcta 188  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||   ||||||||||||| ||||||||    
T  9419570 ttggtttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaatattcgtttttggttttattccctcta 9419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 13223193 - 13223089
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatct 207  Q
    ||||||||| |||||||||||||||| ||||||| |||||| ||| ||| |||| | | ||||||||||||||||||||||||||||| ||||| || ||    
T  13223193 ttttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcgtttttggttttagtccctctactaacactagttgccaact 13223094  T
Q  208 catca 212  Q
    |||||    
T  13223093 catca 13223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 27524578 - 27524474
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtc 203  Q
    |||| ||||||| | |||||||||||| |||||||||| |||||||||| ||| |||||  ||||||||||||||||||||| ||||||||| | || ||    
T  27524578 ttggtttttaaaattcaaaatttgatgtttacgtttttaaatttcatccctatgtaaatttgtgtttttggttttagtccctgtactaacactacttatc 27524479  T
Q  204 atctc 208  Q
    |||||    
T  27524478 atctc 27524474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 12097709 - 12097809
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtc 203  Q
    |||| ||||||| | ||||| ||||| |||| ||||||||||||||||| ||  |||| | | |||||||||||||||||||||||||| ||||||||||    
T  12097709 ttggtttttaaaattcaaaaattgataattaagttttttaatttcatccctacctaaaaatgcgtttttggttttagtccctctactaagaccagttgtc 12097808  T
Q  204 a 204  Q
    |    
T  12097809 a 12097809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 40767891 - 40767787
Alignment:
Q  120 aaaatttgatgattacgttttttaa-tttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatctcatcaagtga 217  Q
    ||||||||||||||||||||||| | ||||| ||||||| |||| | | |||||| ||||||||||||||||||| | |||||| ||||||||||||||     
T  40767891 aaaatttgatgattacgtttttttagtttcagtccttatgtaaaaatgcgtttttcgttttagtccctctactaagagcagttgccatctcatcaagtgc 40767792  T
Q  218 cacgt 222  Q
    |||||    
T  40767791 cacgt 40767787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 13229046 - 13229161
Alignment:
Q  104 ttgggttttaaattgcaaaat-ttgatgattacgtttttt-aatttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccagtt 200  Q
    |||||||| ||||| |||||  |||||||||||||||||| ||||| | ||| ||| |||| | |||||||| ||||||||||||||||||| | |||||    
T  13229046 ttgggtttaaaatttcaaaaaattgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagtt 13229145  T
Q  201 gtcatctcatcaagtg 216  Q
    ||||||||||||||||    
T  13229146 gtcatctcatcaagtg 13229161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 28253383 - 28253488
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgtttttt-aatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgt 202  Q
    |||| ||||||| | |||||||||||| |||| |||||| |||||||||| ||| |||||    ||||||| ||||||||||||||||||||| | || |    
T  28253383 ttggtttttaaaattcaaaatttgatgtttacctttttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaacactacttat 28253482  T
Q  203 catctc 208  Q
    ||||||    
T  28253483 catctc 28253488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 37401296 - 37401220
Alignment:
Q  119 caaaatttgatgattacgttttttaatttcatccttatttaaatacgtg-tttttggttttagtccctctactaaca 194  Q
    |||||||||||| |||| |||||||| ||||||| ||| |||||  ||| |||||||||||||||||| ||||||||    
T  37401296 caaaatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaaca 37401220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 12096158 - 12096070
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaa 192  Q
    |||| ||||||| | ||||| ||||| |||| |||||||||||||||||   | |||| | | |||||||||||||||| |||||||||    
T  12096158 ttggtttttaaaattcaaaaattgataattaagttttttaatttcatccccgtgtaaaaatgcgtttttggttttagtcactctactaa 12096070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 37402399 - 37402474
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggtttta 179  Q
    |||| ||||||| | |||||||||||  ||||||||||||||||||||| ||| |||||  |  ||||||||||||    
T  37402399 ttggtttttaaaattcaaaatttgatttttacgttttttaatttcatccctatgtaaatttgcatttttggtttta 37402474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 35381659 - 35381567
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttg 201  Q
    ||||||| | ||||| ||||||||||| |||||||||| ||||| ||| |||| |   ||||||| |||||||| ||||| | | ||||||||    
T  35381659 ttttaaaattcaaaaattgatgattacattttttaattacatccctatgtaaaaatacgtttttgcttttagtctctctaattaaaccagttg 35381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 1134423 - 1134317
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcatct 207  Q
    |||||||||| ||||| |||||||||| ||||| ||||||  ||| ||| |||||| | ||||||| ||| ||||||||||||||  |||||||||||||    
T  1134423 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagtccagttgtcatct 1134325  T
Q  208 catcaagt 215  Q
    ||||||||    
T  1134324 catcaagt 1134317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 44904817 - 44904700
Alignment:
Q  104 ttgggttttaaattgcaaaa-tttgatgattacgtttttt---aatttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccag 198  Q
    |||||||| ||||| ||||| |||||||||||||||||||   ||||||| ||| ||| |||| | ||||||||  |||||||||||||||||| | |||    
T  44904817 ttgggtttaaaatttcaaaaatttgatgattacgtttttttttaatttcagtccctatgtaaaaatgtgtttttcattttagtccctctactaagagcag 44904718  T
Q  199 ttgtcatctcatcaagtg 216  Q
    ||||||||||||||||||    
T  44904717 ttgtcatctcatcaagtg 44904700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 28165943 - 28165822
Alignment:
Q  104 ttgggttttaaattgcaaaa-tttgatgattacgtttttt-aatttca-tccttatttaaatacgtgtttttggttttagtccctctactaacaccagtt 200  Q
    |||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||| |||| | | | |||| ||||||||||||||||||| | |||||    
T  28165943 ttgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccttatgtaaaaatgcgcttttcgttttagtccctctactaagagcagtt 28165844  T
Q  201 gtcatctcatcaagtgacacgt 222  Q
      |||||||||||||| |||||    
T  28165843 tccatctcatcaagtgtcacgt 28165822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 28167107 - 28167213
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgtttt---ttaatttcatccttatttaaatacgtgtttttggttttagtccctctactaacaccagttgtcat 205  Q
    ||||||||| |||||||||||||||| |||||   |||||||| ||| ||| |||| | | ||||||| |||||||||||||||||| |||||||| ||     
T  28167107 ttttaaattccaaaatttgatgattatgtttttttttaatttcgtccctatgtaaaaatgcgtttttgattttagtccctctactaagaccagttgccaa 28167206  T
Q  206 ctcatca 212  Q
    |||||||    
T  28167207 ctcatca 28167213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 31559312 - 31559386
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtcc 183  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||| ||| ||||||   |||||||||||||||||    
T  31559312 ttttaaatttcaaaattcgatgattacgtgttttaatttcatccctatgtaaatattcgtttttggttttagtcc 31559386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 31559486 - 31559526
Alignment:
Q  254 aacggaagttgacgttagggaccaattccaaaaagttaaga 294  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31559486 aacggaagttgacgttagggaccaattccaaaaagttaaga 31559526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 30547820 - 30547892
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttag 180  Q
    ||||||||||  ||||||||||||||| ||||||||||||| ||||||| ||||||    |||||||||||||    
T  30547820 gttttaaattttaaaatttgatgattatgttttttaatttcgtccttatgtaaatatacatttttggttttag 30547892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 44905952 - 44906028
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacg-ttttttaatttcatccttatttaaatacgtgtttttggttttagtccc 184  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||| ||| |||| | |  |||||||||||||||||    
T  44905952 ttttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcatttttggttttagtccc 44906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 43517852 - 43517930
Alignment:
Q  109 ttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctct 187  Q
    ||||||| | |||||||||||| |||| |||||||| ||||||| ||| | |||    |||||||||||||||||||||    
T  43517852 ttttaaaattcaaaatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttggttttagtccctct 43517930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 9262825 - 9262884
Alignment:
Q  257 ggaagttgacgttagggaccaattccaaaaagtt---aagatacaagggctgtttcgcaa 313  Q
    ||||||||||||||||||||||||||| |||| |   |||||||||||  ||||||||||    
T  9262825 ggaagttgacgttagggaccaattccataaagataacaagatacaaggattgtttcgcaa 9262884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 5696154 - 5696234
Alignment:
Q  108 gttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggttttagtccctcta 188  Q
    |||||||| | |||| ||||||||||| |||||||| |||| ||| | | |||||    ||||||||||||||||||||||    
T  5696154 gttttaaaattcaaattttgatgattatgttttttattttcgtccctgtgtaaatttacgtttttggttttagtccctcta 5696234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 31558075 - 31558021
Alignment:
Q  258 gaagttgacgttagggaccaattccaaaaagtt---aagatacaagggctgtttc 309  Q
    |||||||||||||||| |||||| |||||||||   |||||||||||| ||||||    
T  31558075 gaagttgacgttaggggccaatttcaaaaagttaacaagatacaagggttgtttc 31558021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 6780 - 6856
Alignment:
Q  119 caaaatttgatgattacgttttttaatttcatccttatttaaatacgtg-tttttggttttagtccctctactaaca 194  Q
    |||||||||||| |||| |||||||| ||||||| ||| |||||  ||| |||||||||||||||||| ||||||||    
T  6780 caaaatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaaca 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 5677 - 5602
Alignment:
Q  104 ttgggttttaaattgcaaaatttgatgattacgttttttaatttcatccttatttaaatacgtgtttttggtttta 179  Q
    |||| ||||||| | |||||||||||  ||||||||||||||||||||| ||| |||||  |  ||||||||||||    
T  5677 ttggtttttaaaattcaaaatttgatttttacgttttttaatttcatccctatgtaaatttgcatttttggtttta 5602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 113 times since January 2019
Visitors: 6125