View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0860_low_1 (Length: 675)
Name: NF0860_low_1
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0860_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 39299016 - 39299171
Alignment:
| Q |
1 |
cctttgcctgaacaactgcagacttggctttctccgccacaggggtagcatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttc |
100 |
Q |
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| T |
39299016 |
cctttgcctgaacaactgcagacttggctttctccgccacaggggtaacatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttc |
39299115 |
T |
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| Q |
101 |
ataaccttgttgtgttttctcaagagttgcatctttggcttgtgctgctttctcca |
156 |
Q |
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| T |
39299116 |
ataaccttgttgtgttttctcaacagttgcatctttggcttgtgctgctttctcca |
39299171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 547 - 664
Target Start/End: Original strand, 39299562 - 39299679
Alignment:
| Q |
547 |
cccacattgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctcggccacaacttgtcctgt |
646 |
Q |
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| T |
39299562 |
cccacatcgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctctgccacaacttgtcctgt |
39299661 |
T |
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| Q |
647 |
tcccattcctctgttcat |
664 |
Q |
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| T |
39299662 |
tcccattcctctgttcat |
39299679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 39299363 - 39299471
Alignment:
| Q |
348 |
tgttcagcaccactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagctacactctttcccaagattacaccttcatttt |
447 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39299363 |
tgttcagcagcactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagcaacactctttcccaagattacaccttcatttt |
39299462 |
T |
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| Q |
448 |
caccaccaa |
456 |
Q |
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||||||||| |
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| T |
39299463 |
caccaccaa |
39299471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 39299247 - 39299332
Alignment:
| Q |
232 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299247 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
39299332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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