View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0860_low_19 (Length: 249)
Name: NF0860_low_19
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0860_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 24561702 - 24561460
Alignment:
| Q |
4 |
agtgagatgaagagactaccattggtttaagagatatcctattgaaagcatttgaactgcatcaccatttgatatttgagaatcaaaatccgtaattggt |
103 |
Q |
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| T |
24561702 |
agtgtgatgaagagactaccattggtttaagagatatcctattgaaagcatttgaactgcatcaccatttgatatttgagaatcaaaatccgcaattggt |
24561603 |
T |
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| Q |
104 |
tacccttaaaatctttattgtagttgcttcatgaataagcaactcatgtatttgatttggagtattattgtgcagtcttgcttttcattgaggttgtttt |
203 |
Q |
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| T |
24561602 |
tacccttaaaatctttattgtagttgcttcatgaataagcaactcatgtatttgatttggagtattattgtgcagtcttgcttttcattgaggttgtttt |
24561503 |
T |
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| Q |
204 |
gttgtggccgataaaggaagactaacaaaggatctgcaatata |
246 |
Q |
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| T |
24561502 |
gttgtggccgataaaggaagactaacaaaggatctgcaatata |
24561460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 52 - 249
Target Start/End: Original strand, 37223647 - 37223844
Alignment:
| Q |
52 |
catttgaactgcatcaccatttgatatttgagaatcaaaatccgtaattggttacccttaaaatctttattgtagttgcttcatgaataagcaactcatg |
151 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||| |
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| T |
37223647 |
catttgaactatgtcaccatttgatatttgagaatcaaaatccacaattggttacctttaaaatctttattgttgttgcttcataaataagcaacttatg |
37223746 |
T |
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| Q |
152 |
tatttgatttggagtattattgtgcagtcttgcttttcattgaggttgttttgttgtggccgataaaggaagactaacaaaggatctgcaatatattt |
249 |
Q |
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| T |
37223747 |
tatttgatttggagtattattgtgcagtcttgctcttcattgacattgttttgttatggccaataaagaaaaagtaacaaaggatcagcagtatattt |
37223844 |
T |
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