View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0860_low_23 (Length: 209)
Name: NF0860_low_23
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0860_low_23 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 54778060 - 54777978
Alignment:
| Q |
127 |
agcataggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaa |
209 |
Q |
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| T |
54778060 |
agcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaa |
54777978 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 54791085 - 54791167
Alignment:
| Q |
127 |
agcataggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaa |
209 |
Q |
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| T |
54791085 |
agcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaa |
54791167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 52283743 - 52283821
Alignment:
| Q |
127 |
agcataggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctag |
205 |
Q |
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| T |
52283743 |
agcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctag |
52283821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 799024 - 799093
Alignment:
| Q |
132 |
aggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgac |
201 |
Q |
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| T |
799024 |
aggttcggcaaacagaagcacaaagcaaaaagcaaaccacctggctctggcaaagtttttgaggactgac |
799093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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