View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0860_low_4 (Length: 388)
Name: NF0860_low_4
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0860_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 378
Target Start/End: Complemental strand, 42004473 - 42004125
Alignment:
| Q |
30 |
aagagatggataacattgacctgccgctgaatctattggattcatagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctcc |
129 |
Q |
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| T |
42004473 |
aagagatggataacattgacctgccgctgaatctattggattcacagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctcc |
42004374 |
T |
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| Q |
130 |
gaaaagacacagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgc |
229 |
Q |
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| T |
42004373 |
gaaaagacacagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgc |
42004274 |
T |
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| Q |
230 |
caaaatcttgaccacactggcaatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42004273 |
caaaatcttgaccacactggcaatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccat |
42004174 |
T |
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| Q |
330 |
tacgttaaattcattttagttttgtcacacaaaatttttactatctgtg |
378 |
Q |
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| T |
42004173 |
tatgttaaactcattttagttttgtcacacaaaatttttactatctgtg |
42004125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 42013304 - 42013102
Alignment:
| Q |
38 |
gataacattgacctgccgctgaatctattggattcatagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctccgaaaagac |
137 |
Q |
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| T |
42013304 |
gataactttgacctgtcgcagaatttattggattcacagcaacttgcggaaggactttccttgttcgcagatttctttcagagccagtctccgaaaaggg |
42013205 |
T |
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| Q |
138 |
acagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgccaaaatct |
237 |
Q |
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| |||||| | || |||| | | | ||||||||||| | |||||||||| ||||| ||||||| ||||||||||| | |||||||| |||||||| |
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| T |
42013204 |
atggggaaagcggagagcaaatggaacgacctagtctttccgtatatgctcatttaggagcagagcaattgaagaaagatattgaagagtgtcaaaatct |
42013105 |
T |
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| Q |
238 |
tga |
240 |
Q |
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||| |
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| T |
42013104 |
tga |
42013102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 42013016 - 42012922
Alignment:
| Q |
251 |
aatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccattacgttaaattcatttta |
347 |
Q |
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|||||| ||||||||||| || ||||||| |||||||||||||||| |||| ||||||| ||||||||| |||||| ||| |||||||||||||| |
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| T |
42013016 |
aatgtagagcttgactcacaaccttccgatattcgattaagtcaactggta--ttcctattttctcaatgaccttccaatacattaaattcatttta |
42012922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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