View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0860_low_5 (Length: 375)
Name: NF0860_low_5
Description: NF0860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0860_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 51767388 - 51767044
Alignment:
| Q |
13 |
aatatcggtgcccaccaatgaaaacaactgatatcacattgagatggtgaaatcacaaatacaaaccaagtgttcctcgatgttttgaactcactcacag |
112 |
Q |
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| T |
51767388 |
aatatcggtgcccaccaatgaaaacaactaatatcacattgaaatagtgaaatcacaagtacaaaccaagtgttcttcgatgtcttaa----actcacag |
51767293 |
T |
|
| Q |
113 |
acaccaaacacatattcttagtatggcccgcctctaaggatacccttagttcaaaggctaccacgagttggaagcctaccnnnnnnntttgccacacaat |
212 |
Q |
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| T |
51767292 |
acaccaaacacatattcttagtatggcccgcctctaaggatacccttagttcaaaggcaaccacgagttggaagccta-aaaaaaaatttgccacacaat |
51767194 |
T |
|
| Q |
213 |
ttggacctttggtcgtccaagacttgcccaatttgctctcaaaccccttctagttgtcgcaagaaaagttgaaaccgataagaacnnnnnnncaagagcc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||| |
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| T |
51767193 |
ttggacctttggtcgtccaagacttgcccaatttgctctcaaacctcttctagttgtcgccagaaaagttgaaaccgataataactttttttcaagagcc |
51767094 |
T |
|
| Q |
313 |
ccatataaaaacttaaaagagaaaagaccggatttgttaagagtccgagt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51767093 |
ccatataaaaacttaaaagagaaaagaccggatttgtcaagagtccgagt |
51767044 |
T |
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