View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0861_low_1 (Length: 499)
Name: NF0861_low_1
Description: NF0861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0861_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 28 - 446
Target Start/End: Complemental strand, 33785825 - 33785407
Alignment:
| Q |
28 |
caaattttgcttagaggtaagacctggaaaaagtgttggactagttggaaaaagtggatgtggaaaatcaactgttattgcattaatacaaagattctat |
127 |
Q |
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| T |
33785825 |
caaattttgcttagaggtaagacctggaaaaagtgttggactagttggaaaaagtggatgtggaaaatcaactgttattgcattaatacaaagattctat |
33785726 |
T |
|
| Q |
128 |
gatgttgaaagaggatcagtgaaagttgataatgtggatttaagagaattagatattcattggtatagacaacatactgcattagtaagtcaagaacctg |
227 |
Q |
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| T |
33785725 |
gatgttgaaagaggatcagtgaaagttgataatgtggatttaagagaattagatattcattggtatagacaacatactgcattagtaagtcaagaacctg |
33785626 |
T |
|
| Q |
228 |
tgatatattctggtagcatacgtgacaatattttgtttggaaaacaagatgcaagtgaaaatgaagttgttgaggctgctaggtctgcaaatgctcatga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33785625 |
tgatatattctggtagcatacgtgacaatattttgtttggaaaacaagatgcaagtgaaaatgaagttgttgaggctgctaggtctgcaaatgctcatga |
33785526 |
T |
|
| Q |
328 |
cttcatatcgtaagtttcctctttatgca-nnnnnnnnnattatcaagaatcgaactcggtatcctagagtttacaacactcacacactgcgtaccgatc |
426 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33785525 |
cttcatatcgtaagtttcctctttatgcattttttttttattatcaagaatcgaactcggtatcctagagtttacaacactcacacactgcgta-cgatc |
33785427 |
T |
|
| Q |
427 |
acttgcgtttgaacctgata |
446 |
Q |
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|||||||||||||||||||| |
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| T |
33785426 |
acttgcgtttgaacctgata |
33785407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 33789587 - 33789507
Alignment:
| Q |
51 |
ctggaaaaagtgttggactagttggaaaaagtggatgtggaaaatcaactgttattgcattaatacaaagattctatgatg |
131 |
Q |
| |
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||||||||| ||||| ||||||||| ||||||| ||||||||||||| | || |||||| |||||||||| ||||||| |
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| T |
33789587 |
ctggaaaaactgttgcactagttggtgcaagtggaagtggaaaatcaacagcaatagcattagtacaaagattttatgatg |
33789507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 51159537 - 51159605
Alignment:
| Q |
62 |
gttggactagttggaaaaagtggatgtggaaaatcaactgttattgcattaatacaaagattctatgat |
130 |
Q |
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|||| ||| |||||| |||||||| ||||||||||||| || || ||||| |||||||||| |||||| |
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| T |
51159537 |
gttgcactggttggagaaagtggaagtggaaaatcaacagtgatctcattactacaaagattttatgat |
51159605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 51202145 - 51202213
Alignment:
| Q |
62 |
gttggactagttggaaaaagtggatgtggaaaatcaactgttattgcattaatacaaagattctatgat |
130 |
Q |
| |
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|||| ||| |||||| |||||||| ||||||||||||| || || |||| ||||||||||| |||||| |
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| T |
51202145 |
gttgcacttgttggagaaagtggaagtggaaaatcaacagtgatctcattgatacaaagattttatgat |
51202213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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