View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0861_low_2 (Length: 350)
Name: NF0861_low_2
Description: NF0861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0861_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 342
Target Start/End: Original strand, 47422624 - 47422936
Alignment:
| Q |
30 |
caaaaccctagctcaagtgacacagagtactcaaattccacttctacccttgttgtgcctacaataatggagaaattagaggataggagaaggtggccaa |
129 |
Q |
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| T |
47422624 |
caaaaccctagctcaagtgacacagagtactcaaattccacttctacccttgttgtgcctacaataatggagaaattagaggataggagaaggtggccaa |
47422723 |
T |
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| Q |
130 |
gagatgaagtgttggcactcataaacctcaagtctactacaagtgtaataaacagaagcaacaataatgttgaaggaaatagtaataagggacctttgtg |
229 |
Q |
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| T |
47422724 |
gagatgaagtgttggcactcataaacctcaagtctactacaagtgtaataaacagaagcaacaataatgttgaaggaaatagtaataagggacctttgtg |
47422823 |
T |
|
| Q |
230 |
ggagagaatctctgaagggatgtttgagttgggatacaagagaagtgcaaagaggtgtaaagaaaaatgggaaaacataaataagtattttaaaaagaca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422824 |
ggagagaatctctgaagggatgtttgagttgggatacaagagaagcgcaaagaggtgtaaagaaaaatgggaaaacataaataagtattttaaaaagaca |
47422923 |
T |
|
| Q |
330 |
aaggatattgttg |
342 |
Q |
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||||||||||||| |
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| T |
47422924 |
aaggatattgttg |
47422936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 36127513 - 36127406
Alignment:
| Q |
228 |
tgggagagaatctctgaagggatgtttgagttgggatacaagagaagtgcaaagaggtgtaaagaaaaatgggaaaacataaataagtattttaaaaaga |
327 |
Q |
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||||||||||| || |||| ||||| ||||| ||||||||||||||||||||||| || ||||| || ||||| || || || |||||||| | ||| | |
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| T |
36127513 |
tgggagagaatttcacaaggaatgttggagttaggatacaagagaagtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaa |
36127414 |
T |
|
| Q |
328 |
caaaggat |
335 |
Q |
| |
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|||||||| |
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| T |
36127413 |
caaaggat |
36127406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 12683295 - 12683339
Alignment:
| Q |
275 |
tgcaaagaggtgtaaagaaaaatgggaaaacataaataagtattt |
319 |
Q |
| |
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|||||||||||| ||||| |||||||||||||| || |||||||| |
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| T |
12683295 |
tgcaaagaggtgcaaagagaaatgggaaaacattaacaagtattt |
12683339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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