View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0861_low_4 (Length: 323)
Name: NF0861_low_4
Description: NF0861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0861_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 40770710 - 40770917
Alignment:
| Q |
35 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataac |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40770710 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
40770809 |
T |
|
| Q |
135 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttccacttataacaatatttgcacaat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40770810 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
40770909 |
T |
|
| Q |
235 |
tttttcat |
242 |
Q |
| |
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|||||||| |
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| T |
40770910 |
tttttcat |
40770917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 8332369 - 8332165
Alignment:
| Q |
35 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataac |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8332369 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
8332270 |
T |
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| Q |
135 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttccacttataacaatatttgcacaat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8332269 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
8332170 |
T |
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| Q |
235 |
ttttt |
239 |
Q |
| |
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||||| |
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| T |
8332169 |
ttttt |
8332165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 17020528 - 17020657
Alignment:
| Q |
73 |
caatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagacc |
172 |
Q |
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|||||||||| | ||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||| | ||| |||| |
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| T |
17020528 |
caatggaatcaagctcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc |
17020627 |
T |
|
| Q |
173 |
atatttcatagcagtatgcacagaggtatt |
202 |
Q |
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| T |
17020628 |
tttcttcattgcagtttgcacagaggtatt |
17020657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 119473 - 119338
Alignment:
| Q |
73 |
caatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagacc |
172 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||| | ||| |||| |
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| T |
119473 |
caatggaatcaatttcttcatcaatcagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc |
119374 |
T |
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| Q |
173 |
atatttcatagcagtatgcacagaggtattactact |
208 |
Q |
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| ||| | ||||| |||||||||||||||||||| |
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| T |
119373 |
tttcttcgttgcagtttgcacagaggtattactact |
119338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 19777177 - 19777307
Alignment:
| Q |
75 |
atggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagaccat |
174 |
Q |
| |
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||||| ||| |||||||||| ||| ||||| ||| ||| |||| | |||||| ||| ||||||||||||||| ||||| ||||| || |||||||||| |
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| T |
19777177 |
atggagtccagttcttcatccataagtgaaatacaaaccaatcaaccatcagtaaattgcagcatagctccattgatgacatctgagtctaatagaccat |
19777276 |
T |
|
| Q |
175 |
atttcatagcagtatgcacagaggtattact |
205 |
Q |
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|||||| ||| | ||||||||||||||||| |
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| T |
19777277 |
ttttcattgcaatctgcacagaggtattact |
19777307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 144125 - 143996
Alignment:
| Q |
72 |
acaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagac |
171 |
Q |
| |
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||||||||||| ||||||||| ||| ||||||||||| ||||| ||||||||| ||| ||||||||||||| | |||||||||||| ||||||| |
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| T |
144125 |
acaatggaatcaagttcttcattaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccaatgatgacttctgaaagtaatagac |
144026 |
T |
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| Q |
172 |
catatttcatagcagtatgcacagaggtat |
201 |
Q |
| |
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| T |
144025 |
ctttcttcattgcagtttgcacagaggtat |
143996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 18059832 - 18059703
Alignment:
| Q |
72 |
acaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagac |
171 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||| ||| |||||||||||| | |||||||||||| ||||||| |
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|
| T |
18059832 |
acaatggaatcaagttcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgtagcatagctccaatgatgacttctgaaagtaatagac |
18059733 |
T |
|
| Q |
172 |
catatttcatagcagtatgcacagaggtat |
201 |
Q |
| |
|
| | ||||| ||||| ||||||||||||| |
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| T |
18059732 |
ctttcttcattgcagtttgcacagaggtat |
18059703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 4255255 - 4255183
Alignment:
| Q |
134 |
cagcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattacta |
206 |
Q |
| |
|
||||| ||||||||| ||||| |||||| |||||||| | |||| |||| || |||||||||||||||||| |
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| T |
4255255 |
cagcagagctccattgatgacaattgaatccaatagaccttctttcttagctgtttgcacagaggtattacta |
4255183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 21898225 - 21898153
Alignment:
| Q |
134 |
cagcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattacta |
206 |
Q |
| |
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||||| ||||||||| ||||| |||||| |||||||| | |||| |||| || |||||||||||||||||| |
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| T |
21898225 |
cagcagagctccattgatgacaattgaatccaatagaccttctttcttagctgtttgcacagaggtattacta |
21898153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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