View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0861_low_5 (Length: 323)

Name: NF0861_low_5
Description: NF0861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0861_low_5
NF0861_low_5
[»] chr5 (28 HSPs)
chr5 (78-171)||(22496380-22496473)
chr5 (78-171)||(1598065-1598158)
chr5 (81-171)||(39564624-39564713)
chr5 (78-171)||(5811941-5812034)
chr5 (78-171)||(40831120-40831213)
chr5 (81-171)||(1212074-1212164)
chr5 (81-171)||(16476242-16476332)
chr5 (81-171)||(23106927-23107017)
chr5 (81-171)||(28968944-28969034)
chr5 (81-171)||(16478828-16478919)
chr5 (81-171)||(25336721-25336811)
chr5 (255-323)||(5812118-5812186)
chr5 (255-323)||(16478677-16478745)
chr5 (244-323)||(39564786-39564865)
chr5 (81-171)||(22720700-22720790)
chr5 (81-171)||(36789081-36789171)
chr5 (244-323)||(1598231-1598310)
chr5 (97-170)||(22386368-22386440)
chr5 (244-323)||(40830968-40831047)
chr5 (246-323)||(22496530-22496608)
chr5 (261-323)||(22386505-22386567)
chr5 (244-308)||(16476105-16476169)
chr5 (244-308)||(22720863-22720927)
chr5 (244-308)||(23107090-23107154)
chr5 (244-308)||(28969107-28969171)
chr5 (244-308)||(1212237-1212301)
chr5 (244-308)||(25336584-25336648)
chr5 (244-308)||(36789245-36789309)
[»] chr7 (28 HSPs)
chr7 (78-171)||(21953577-21953670)
chr7 (78-171)||(6613303-6613396)
chr7 (78-168)||(9178741-9178831)
chr7 (81-171)||(35505497-35505587)
chr7 (81-171)||(37315484-37315574)
chr7 (78-171)||(46805413-46805506)
chr7 (81-171)||(18784010-18784100)
chr7 (81-171)||(34643220-34643310)
chr7 (81-171)||(35114010-35114100)
chr7 (81-171)||(42047255-42047345)
chr7 (244-323)||(6613151-6613230)
chr7 (81-171)||(42049957-42050048)
chr7 (255-323)||(34643393-34643461)
chr7 (255-323)||(42049806-42049874)
chr7 (255-323)||(46805261-46805329)
chr7 (81-171)||(44044950-44045040)
chr7 (248-323)||(21953747-21953822)
chr7 (86-156)||(47400152-47400222)
chr7 (78-169)||(19295899-19295990)
chr7 (244-323)||(9178907-9178986)
chr7 (244-308)||(18784173-18784237)
chr7 (244-308)||(35505360-35505424)
chr7 (244-308)||(42047118-42047182)
chr7 (244-308)||(44045113-44045177)
chr7 (244-308)||(35113873-35113937)
chr7 (244-308)||(37315647-37315711)
chr7 (259-320)||(19296081-19296142)
chr7 (245-323)||(47400332-47400409)
[»] chr4 (23 HSPs)
chr4 (78-171)||(27023926-27024019)
chr4 (81-171)||(36352613-36352703)
chr4 (78-171)||(7510119-7510212)
chr4 (78-171)||(34802697-34802790)
chr4 (78-171)||(9767985-9768078)
chr4 (81-171)||(4943842-4943932)
chr4 (81-171)||(27071687-27071777)
chr4 (78-170)||(48945917-48946009)
chr4 (244-323)||(27024092-27024171)
chr4 (81-171)||(27151779-27151869)
chr4 (244-323)||(36352776-36352855)
chr4 (255-323)||(5944364-5944432)
chr4 (244-323)||(34802546-34802624)
chr4 (88-171)||(5944515-5944600)
chr4 (245-323)||(25887907-25887985)
chr4 (244-323)||(48945764-48945843)
chr4 (86-170)||(25888094-25888176)
chr4 (244-308)||(7509982-7510046)
chr4 (244-308)||(27071550-27071614)
chr4 (244-308)||(4943705-4943769)
chr4 (247-299)||(27151651-27151703)
chr4 (244-308)||(9768151-9768217)
chr4 (281-323)||(48426430-48426472)
[»] chr3 (36 HSPs)
chr3 (78-171)||(28417765-28417858)
chr3 (78-171)||(4066113-4066206)
chr3 (78-171)||(37965437-37965530)
chr3 (78-171)||(22398462-22398555)
chr3 (78-171)||(33955293-33955386)
chr3 (78-171)||(47333813-47333906)
chr3 (81-171)||(35350206-35350296)
chr3 (81-171)||(43845459-43845549)
chr3 (81-171)||(54610815-54610905)
chr3 (78-171)||(3344415-3344507)
chr3 (79-171)||(33956598-33956690)
chr3 (244-323)||(3344580-3344659)
chr3 (81-171)||(1002414-1002504)
chr3 (81-171)||(10122082-10122172)
chr3 (81-171)||(26705518-26705608)
chr3 (244-323)||(28417931-28418010)
chr3 (244-323)||(37965285-37965364)
chr3 (78-167)||(45579485-45579574)
chr3 (79-171)||(30107318-30107410)
chr3 (244-323)||(47333979-47334058)
chr3 (245-323)||(23302709-23302787)
chr3 (244-323)||(4066279-4066359)
chr3 (245-308)||(23303381-23303444)
chr3 (255-323)||(33955470-33955539)
chr3 (244-323)||(22398311-22398389)
chr3 (97-156)||(23303568-23303627)
chr3 (256-323)||(45579683-45579749)
chr3 (244-308)||(1002577-1002641)
chr3 (244-308)||(10122245-10122309)
chr3 (244-308)||(26705681-26705745)
chr3 (244-308)||(35350369-35350433)
chr3 (244-308)||(30107181-30107245)
chr3 (244-308)||(38190023-38190087)
chr3 (244-308)||(43845322-43845386)
chr3 (244-308)||(54610678-54610742)
chr3 (244-323)||(33956763-33956843)
[»] scaffold0088 (6 HSPs)
scaffold0088 (78-169)||(740-831)
scaffold0088 (78-171)||(24624-24717)
scaffold0088 (78-171)||(11444-11537)
scaffold0088 (244-323)||(906-985)
scaffold0088 (244-323)||(24790-24869)
scaffold0088 (244-323)||(11293-11371)
[»] chr1 (30 HSPs)
chr1 (78-171)||(24776100-24776193)
chr1 (78-171)||(45537521-45537614)
chr1 (81-171)||(38983960-38984050)
chr1 (78-171)||(49005528-49005621)
chr1 (81-171)||(2841001-2841091)
chr1 (81-171)||(13497192-13497282)
chr1 (78-171)||(43642584-43642677)
chr1 (81-171)||(2023698-2023788)
chr1 (81-171)||(32050414-32050504)
chr1 (81-171)||(42436321-42436411)
chr1 (244-323)||(24775948-24776027)
chr1 (81-171)||(28645194-28645285)
chr1 (81-171)||(32523386-32523477)
chr1 (244-323)||(43642750-43642829)
chr1 (86-171)||(18410875-18410961)
chr1 (255-323)||(18410724-18410792)
chr1 (255-323)||(28645368-28645436)
chr1 (255-323)||(32523560-32523628)
chr1 (244-323)||(2023546-2023625)
chr1 (244-323)||(38984123-38984202)
chr1 (244-323)||(42807223-42807302)
chr1 (244-323)||(2840848-2840928)
chr1 (244-323)||(49005375-49005455)
chr1 (86-164)||(42807382-42807460)
chr1 (78-170)||(20275055-20275152)
chr1 (244-308)||(13497055-13497119)
chr1 (244-308)||(42436184-42436248)
chr1 (244-323)||(45537370-45537448)
chr1 (255-318)||(20274904-20274968)
chr1 (244-308)||(32050277-32050341)
[»] chr2 (20 HSPs)
chr2 (81-171)||(4650852-4650942)
chr2 (78-171)||(4720123-4720216)
chr2 (244-323)||(40263920-40263999)
chr2 (81-171)||(39121898-39121988)
chr2 (81-171)||(42842416-42842506)
chr2 (86-171)||(6905086-6905171)
chr2 (81-171)||(12256054-12256144)
chr2 (81-159)||(40264081-40264159)
chr2 (244-323)||(6904934-6905013)
chr2 (245-323)||(3554566-3554644)
chr2 (245-323)||(42224552-42224630)
chr2 (244-323)||(4651015-4651095)
chr2 (83-171)||(9617012-9617099)
chr2 (244-323)||(4720288-4720367)
chr2 (244-321)||(9616863-9616939)
chr2 (97-156)||(42224750-42224809)
chr2 (97-170)||(3554415-3554487)
chr2 (244-308)||(12256217-12256281)
chr2 (244-308)||(39122061-39122125)
chr2 (244-308)||(42842579-42842643)
[»] chr6 (12 HSPs)
chr6 (78-171)||(22510913-22511006)
chr6 (81-171)||(4271014-4271104)
chr6 (81-171)||(14180611-14180701)
chr6 (246-323)||(22510761-22510838)
chr6 (81-171)||(18902535-18902626)
chr6 (255-323)||(18902709-18902777)
chr6 (246-323)||(19421092-19421169)
chr6 (78-171)||(19421244-19421334)
chr6 (81-171)||(14176075-14176165)
chr6 (244-308)||(4271177-4271241)
chr6 (244-308)||(14175938-14176002)
chr6 (244-308)||(14180474-14180538)
[»] scaffold1289 (2 HSPs)
scaffold1289 (81-171)||(837-927)
scaffold1289 (244-323)||(685-764)
[»] chr8 (24 HSPs)
chr8 (81-171)||(12501088-12501177)
chr8 (78-171)||(39621514-39621607)
chr8 (81-171)||(6417233-6417323)
chr8 (81-171)||(22514483-22514573)
chr8 (81-171)||(40558066-40558156)
chr8 (78-171)||(33441989-33442082)
chr8 (244-323)||(12501250-12501329)
chr8 (81-171)||(13279146-13279236)
chr8 (81-171)||(16428817-16428907)
chr8 (81-171)||(18385015-18385106)
chr8 (81-171)||(36895957-36896047)
chr8 (255-323)||(6417082-6417150)
chr8 (255-323)||(18385189-18385257)
chr8 (86-170)||(29088558-29088641)
chr8 (245-323)||(16888177-16888255)
chr8 (255-323)||(39621691-39621759)
chr8 (97-170)||(16885906-16885978)
chr8 (244-308)||(13279309-13279373)
chr8 (244-308)||(16428680-16428744)
chr8 (244-308)||(22514346-22514410)
chr8 (244-308)||(33441852-33441916)
chr8 (244-308)||(40557929-40557993)
chr8 (244-299)||(36896120-36896175)
chr8 (245-323)||(29088720-29088800)
[»] scaffold0009 (2 HSPs)
scaffold0009 (81-171)||(198312-198402)
scaffold0009 (255-323)||(198485-198553)
[»] scaffold1788 (2 HSPs)
scaffold1788 (78-171)||(811-904)
scaffold1788 (244-308)||(977-1043)
[»] scaffold0007 (2 HSPs)
scaffold0007 (81-171)||(11742-11832)
scaffold0007 (244-308)||(11605-11669)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 22496380 - 22496473
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22496380 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagtgctactatttatatagaaaaatagtaccataacgg 22496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 1598065 - 1598158
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  1598065 cagagaacagaaaaagaagaattatattttgtgattgttgtgtactcgaacccaaaaactctactatttatatagaaaaatagtaccataacgg 1598158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 39564624 - 39564713
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||    
T  39564624 agaacagaaaaagaagaactatattttgtgattgttgtgtactcg-acccaaaaacgctactatttatataaaaaaatagtaccataacgg 39564713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 5811941 - 5812034
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  5811941 cagagaacaaaaatagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtatcataacgg 5812034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 40831213 - 40831120
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  40831213 cagagaacataaaaagaagaattatattttgtgattgttgtgtactcgaacccaaaaactctactatttatatagaaaaatagtaccataacgg 40831120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 1212074 - 1212164
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  1212074 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 1212164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 16476332 - 16476242
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  16476332 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatatctactatttatatagaaaaatagtatcataacgg 16476242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 23106927 - 23107017
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  23106927 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 23107017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 28968944 - 28969034
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  28968944 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 28969034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 16478919 - 16478828
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  16478919 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 16478828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 25336811 - 25336721
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  25336811 agaacagaaaacgaagtactatattttgtgattgttgtatactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 25336721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 5812118 - 5812186
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  5812118 ttagattatatttcatgtaacctacaaaaaattaatttcataacatttaaaattcaataatatcttatt 5812186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 16478745 - 16478677
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16478745 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 16478677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 39564786 - 39564865
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  39564786 gcattaaacaattagattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 39564865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 22720700 - 22720790
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  22720700 agaacagaaaacgaataactacattttgtgattgttgtttactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 22720790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 36789081 - 36789171
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  36789081 agaacagaaaacgaataactatattttgtgattattgtatactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 36789171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 1598231 - 1598310
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  1598231 gcattaaacaattatattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 1598310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 22386368 - 22386440
Alignment:
Q  97 aactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||    
T  22386368 aactatattttgtgattgttgtgtactcatacccaaaagtgcttctatttatatag-aaaatagtaccataacg 22386440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 40831047 - 40830968
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||  ||| |||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||    
T  40831047 gcattaaacaattatattatatttcatgtaacctacaaaaaatcaacttcataacatttgaaatttaataatatcttatt 40830968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 22496530 - 22496608
Alignment:
Q  246 attaaacgtttagattatatttcatgtaacctacaaaaaa-ttaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||| | ||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  22496530 attaaatgattatattatatttcatgtaacctacaaaaaaattaatttcataacatttaaaattcaataatatcttatt 22496608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 22386505 - 22386567
Alignment:
Q  261 tatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||    
T  22386505 tatatttcatgtaacctacaaaaaattaacttcataagatttgaaatttaataatatcttatt 22386567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 16476169 - 16476105
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  16476169 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 16476105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 22720863 - 22720927
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  22720863 gcattaaacggttaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 22720927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 23107090 - 23107154
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  23107090 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 23107154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 28969107 - 28969171
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  28969107 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 28969171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 1212237 - 1212301
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  1212237 gcattaaatgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 1212301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 25336648 - 25336584
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  25336648 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 25336584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 36789245 - 36789309
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||| || |||||    
T  36789245 gcattaaacgattaaattatattttatgtaacgtacaaaaaattaacttcataacatttgaaatt 36789309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 21953577 - 21953670
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  21953577 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtaccataacgg 21953670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 6613396 - 6613303
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  6613396 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtatccaaaagcgctactatttatatagaaaaatagtaccataacgg 6613303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 9178741 - 9178831
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataa 168  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||    
T  9178741 cagagaacagacaaagaagaactatattttgtgattgttgtgtactcgtaccgaaaagtgctactatttatataaaaaaatagttccataa 9178831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 35505587 - 35505497
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  35505587 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 35505497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 37315484 - 37315574
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  37315484 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 37315574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 46805506 - 46805413
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  46805506 cagagaacaaaaatagaagaactatattttgtgattattgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtatcataacgg 46805413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 18784010 - 18784100
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  18784010 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 18784100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 34643220 - 34643310
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||||||| |||||||||||||||||||    
T  34643220 agaatagaaaaagaagaactatattttgtgattgttgtgtacttgtacctaaaagcgctactatttatataaaaaaatagtaccataacgg 34643310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 35114100 - 35114010
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   |||||||||| |||||||||||||||||||||||    
T  35114100 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttagatagaaaaatagtaccataacgg 35114010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 42047345 - 42047255
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  42047345 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 42047255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 6613230 - 6613151
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  6613230 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 6613151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 42050048 - 42049957
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  42050048 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 42049957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 34643393 - 34643461
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34643393 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 34643461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 42049874 - 42049806
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42049874 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 42049806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 46805329 - 46805261
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  46805329 ttagattatatttcatgtaacctacaaaaaattaatttcataacatttaaaattcaataatatcttatt 46805261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 44044950 - 44045040
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  44044950 agaacagaaaacgaataactacattttgtgattgttgtttactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 44045040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 21953747 - 21953822
Alignment:
Q  248 taaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  21953747 taaacgattagattatatttcatttaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 21953822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 47400152 - 47400222
Alignment:
Q  86 agaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaa 156  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  47400152 agaaaaaaaaaaactatattttgtgattgttgtgtactcatacccaaaagtgcttctatttatatagaaaa 47400222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 19295899 - 19295990
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataac 169  Q
    |||| |||||| |||||| | ||||| |||||||||||||| |||||||| || || | ||||||| |||||||||||||||||||||||||    
T  19295899 cagataacagataaagaatagctataatttgtgattgttgtttactcgtatcccaagacgctactaattatatagaaaaatagtaccataac 19295990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 9178907 - 9178986
Alignment:
Q  244 gcattaaacgtttagattatatttcatgt-aacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| ||||||||||||||    
T  9178907 gcattaaaagattagattatatttcatgttaacctacaaaa-attaacttcataacatttgaaatttaataatatcttatt 9178986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 18784173 - 18784237
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  18784173 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 18784237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 35505424 - 35505360
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  35505424 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 35505360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 42047182 - 42047118
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  42047182 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 42047118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 44045113 - 44045177
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  44045113 gcattaaacggttaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 44045177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 35113937 - 35113873
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  35113937 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 35113873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 37315647 - 37315711
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  37315647 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 37315711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 19296081 - 19296142
Alignment:
Q  259 attatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatctt 320  Q
    ||||||||||||||||| ||| ||||| || |||||||||| || ||||| |||||||||||    
T  19296081 attatatttcatgtaacatactaaaaactagcttcataacatttgaaatttaataatatctt 19296142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 47400332 - 47400409
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||| | ||||||||||||||||||||  || ||||||||||||| |||| | || |||||  |||||||||||||    
T  47400332 cattaaatgattagattatatttcatgtaaattaaaaaaaattaactttataagatttgaaatt-tataatatcttatt 47400409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 27023926 - 27024019
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27023926 cagagaacaaaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagtgctactatttatatagaaaaatagtaccataacgg 27024019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 36352613 - 36352703
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  36352613 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtaccataacgg 36352703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 7510212 - 7510119
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  7510212 cagagaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaaactctactatttatatagaaaaatagtaccataacgg 7510119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 34802790 - 34802697
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  34802790 cagagaacagaaaaagaagaactatattttatgattgttgtgtactcgtacccaaaagcgctactatttatacagaaaaatagtaccataacgg 34802697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 9767985 - 9768078
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  9767985 cagagaacagaaaacgaaaaactatattttgtgattgttgtgtactcatacccaaaaactctactatttatatagaaaaatagtaccataacgg 9768078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 4943932 - 4943842
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  4943932 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 4943842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 27071777 - 27071687
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  27071777 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 27071687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 48946009 - 48945917
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||| |||||||||||||    
T  48946009 cagataacagaaaaagaagaactatattttgtgattgttgtgtactcatacccaaaagctctactatttatatagaaaagtagtaccataacg 48945917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 27024092 - 27024171
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27024092 gcattaaacgattagattatatttcatataacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 27024171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 27151869 - 27151779
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  27151869 agaacagaaaacgaataactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 27151779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 36352776 - 36352855
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  36352776 gcattaaacaattagattatatttcatgtaacctacaaaaaattaacttcataacatttaaagttcaataatatcttatt 36352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 5944432 - 5944364
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5944432 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 5944364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 34802624 - 34802546
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  34802624 gcattaaacgattagattatatttcatgtaacctaca-aaaattaacttcataacatttaaaattcaataatatcctatt 34802546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 5944600 - 5944515
Alignment:
Q  88 aaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat--agaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||  | |||||||||||||||||||    
T  5944600 aaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaaatagtaccataacgg 5944515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 25887985 - 25887907
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||    
T  25887985 cattaaatgattagattatatttcatgtaacctacaaaaaattaacttcataagatttgaaatttaataatatcttatt 25887907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 48945843 - 48945764
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| || ||||| | ||||||||||||    
T  48945843 gcattaaacgattagattatatttcatgtaacctataaaaaattatcttcataacatttgaaatttattaatatcttatt 48945764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 25888176 - 25888094
Alignment:
Q  86 agaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||| |||| |||||||||||| |||||||||| ||||||    
T  25888176 agaaaaagaa-aactatattttgtgattgttgtgtacttatacccaaaagtgcttctatttatatag-aaaatagtactataacg 25888094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 7510046 - 7509982
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  7510046 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 7509982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 27071614 - 27071550
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  27071614 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 27071550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 4943769 - 4943705
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  4943769 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 4943705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 27151703 - 27151651
Alignment:
Q  247 ttaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataaca 299  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  27151703 ttaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataaca 27151651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 9768151 - 9768217
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctac--aaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| |||  |||||||||||||||| |||  |||||||||||||||||||| || |||||    
T  9768151 gcattaaacgattaagttatatttcatgtaacgtacaaaaaaaattaacttcataacatttgaaatt 9768217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 48426472 - 48426430
Alignment:
Q  281 aaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||||||||| || ||||| ||||||||||||||    
T  48426472 aaaaattaacttcataacatttgaaatttaataatatcttatt 48426430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 28417765 - 28417858
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  28417765 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtatccaaaagtgctactatttatatagaaaaatagtaccataacgg 28417858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 4066113 - 4066206
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  4066113 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtatccaaaagcgctactatttatatagaaaaatagtaccataacgg 4066206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 37965530 - 37965437
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  37965530 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtatccaaaagcgctactatttatatagaaaaatagtaccataacgg 37965437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 22398555 - 22398462
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  22398555 cagataacagaaaaagaagagctatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtaccataacgg 22398462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 33955293 - 33955386
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||    
T  33955293 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttgtatagaaaaatagtactataacgg 33955386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 47333813 - 47333906
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  47333813 cagagaacataaaaagaagaactatattttgtgattgttgtgtactcgtatccaaaagcgctactatttatatagaaaaatagtaccataacgg 47333906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 35350206 - 35350296
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  35350206 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 35350296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 43845549 - 43845459
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  43845549 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 43845459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 54610905 - 54610815
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  54610905 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 54610815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 3344415 - 3344507
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||| |||||||||||    
T  3344415 cagagaacagaaaaagaagaactatattt-gtgattgttgtgtactcgtacccaaaagcgctactatatatatagaaaaataataccataacgg 3344507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 33956598 - 33956690
Alignment:
Q  79 agagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |   ||||||||||||||||||||||||||||||||||    
T  33956598 agagaacagaaaaaaaagaactatattttgtgattgttgtgtactcgtactcaagagctctactatttatatagaaaaatagtaccataacgg 33956690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 3344580 - 3344659
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3344580 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttaaaatttaataatatcttatt 3344659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 1002414 - 1002504
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  1002414 agaacagaaaacgaataactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 1002504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 10122082 - 10122172
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  10122082 agaacagaaaacgaaaaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 10122172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 26705518 - 26705608
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  26705518 agaacagaaaacgaagaactatattttgtgattgttatgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 26705608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 28417931 - 28418010
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  28417931 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 28418010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 37965364 - 37965285
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  37965364 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 37965285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 45579485 - 45579574
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccata 167  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||  ||||||||||    
T  45579485 cagagaacagaaaaagaagaattatattttgtgagtgttgtgtactcgtacccaaaagcgctactatttatatggaaaggtagtaccata 45579574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 30107410 - 30107318
Alignment:
Q  79 agagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||   | ||||||||||||||||||||||||||||||||    
T  30107410 agagaacagaaaacgaagagctatattttgtgattgttgtatactcatacccaaaagctcaactatttatatagaaaaatagtaccataacgg 30107318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 47333979 - 47334058
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||    
T  47333979 gcattaaacgattagattatatttcatgtaacctacaaagaattaacttcataacatttgaaatttaataatatcttatt 47334058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 23302787 - 23302709
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||    
T  23302787 cattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataagatttgaaatttaataatatcttatt 23302709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 4066279 - 4066359
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctac-aaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  4066279 gcattaaacgattagattatatttcatgtaacctacaaaaaaattaacttcataacatttgaaatttaataatatcttatt 4066359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 23303444 - 23303381
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  23303444 cattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatt 23303381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 33955470 - 33955539
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaa-aattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||    
T  33955470 ttagattatatttcatgtaacctacaaaaaaattaacttcataacatttgaaatttaataatatcttatt 33955539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 22398389 - 22398311
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  22398389 gcattaaaagattatattatatttcatgtaacctacaaaaaa-taacttcataacatttgaaatttaataatatcttatt 22398311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 23303627 - 23303568
Alignment:
Q  97 aactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaa 156  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  23303627 aactatattttgtgattgttgtgtactcagacccaaaagtgctactatttatatagaaaa 23303568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 45579683 - 45579749
Alignment:
Q  256 tagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  45579683 tagattatatttcatgtaaccta-aaaaaattaacttcataacatttgaaatttaataatatcttatt 45579749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 1002577 - 1002641
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  1002577 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 1002641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 10122245 - 10122309
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  10122245 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 10122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 26705681 - 26705745
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  26705681 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacacttgaaatt 26705745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 35350369 - 35350433
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  35350369 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 35350433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 30107245 - 30107181
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  30107245 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacacttgaaatt 30107181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 38190023 - 38190087
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  38190023 gcattaaacgattaaattatatttcatgtaatgtacaaaaaattaacttcataacatttgaaatt 38190087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 43845386 - 43845322
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  43845386 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 43845322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 54610742 - 54610678
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  54610742 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 54610678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 33956763 - 33956843
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctac-aaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||| |||| ||| ||||||||||||||||| ||| |||||||||||||||||||| || ||||| ||||  ||||||||    
T  33956763 gcatttaacgattaaattatatttcatgtaacatacaaaaaaattaacttcataacatttgaaatttaatagcatcttatt 33956843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 740 - 831
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataac 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  740 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtaccataac 831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 24624 - 24717
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||||    
T  24624 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgttctcaaaagcgctactatttatatagaaaaatagtaccataacgg 24717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 11537 - 11444
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  11537 cagagaacagaaaaagaataactatattttgtgatttttgtgtactcgtacccaaaagcgcgactatttatatagaaaaatagtaccataacgg 11444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 906 - 985
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  906 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttaaaatttaataatatcttatt 985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 24790 - 24869
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  24790 gcattaaacgattagattatatttcatgtaacctagaaaaaattaacttcataacatttaaaatttaataatatcttatt 24869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 11371 - 11293
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11371 gcattaaacacttagattatatttcatgtaacctacaaaaaattaacttcataac-atttaaattcaataatatcttatt 11293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 24776193 - 24776100
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  24776193 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatattaccataacgg 24776100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 45537614 - 45537521
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  45537614 cagagaacagaaaaagaagagctatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtaccataacgg 45537521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 38983960 - 38984050
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38983960 agaacagaaaaagaagaactatattttgtgattgttgtgtacttctacccaaaagtgctactatttatatagaaaaatagtaccataacgg 38984050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 49005621 - 49005528
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  49005621 cagagaacagaaaaagaagaactatattttgtaattgttgtgtactcgtacccaaaagcgctactatttttatagaaaaatagtaccataacgg 49005528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 2841091 - 2841001
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  2841091 agaacagaaaaagaagaactatattttgtgattgttgtgtacttgtaccaaaaagtgctactatttatgtagaaaaatagtaccataacgg 2841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 13497282 - 13497192
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  13497282 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaaactctactatttatatagaaaaatagtaccataacgg 13497192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 43642584 - 43642677
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| || ||||||||    
T  43642584 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccataagcgctactatttatatagaaaaatattatcataacgg 43642677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 2023788 - 2023698
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  2023788 agaacaaaaaaagaagaattatattttgtgattgttgtgtactcgaacccaaaaactctactatttatatagaaaaatagtaccataacgg 2023698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 32050504 - 32050414
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  32050504 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 32050414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 42436411 - 42436321
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  42436411 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 42436321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 24776027 - 24775948
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||    
T  24776027 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatgttatt 24775948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 28645194 - 28645285
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  28645194 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 28645285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 32523386 - 32523477
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  32523386 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 32523477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 43642750 - 43642829
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  43642750 gcattaaacgtttagattttatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 43642829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 18410961 - 18410875
Alignment:
Q  86 agaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  18410961 agaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 18410875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 18410792 - 18410724
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18410792 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 18410724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 28645368 - 28645436
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28645368 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 28645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 32523560 - 32523628
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32523560 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 32523628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 2023625 - 2023546
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  2023625 gcattaaacaattatattatatttcatgtaacctacaaaaaattaacttcataacatttgaaatttaataatatcttatt 2023546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 38984123 - 38984202
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  38984123 gcattaaacgattagattatatttgatgtaacctaaaaaaaattaacttcataacatttgaaatttaataatatcttatt 38984202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 42807302 - 42807223
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| || ||||| ||||||||||||||    
T  42807302 gcattaaacgattagattatatttcatgtaacctataaaaaattatcttcataacatttgaaatttaataatatcttatt 42807223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 2840928 - 2840848
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaa-aaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||    
T  2840928 gcattaaacgattagattatatttgatgtaacctacaaaaaaattaacttcataacatttgaaatttaataatatcttatt 2840848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 49005455 - 49005375
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaa-aaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||    
T  49005455 gcattaaacgattatattatatttcatgtaacctacaaaaaaattaacttcataacatttgaaatttaataatatcttatt 49005375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 42807460 - 42807382
Alignment:
Q  86 agaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtacc 164  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||    
T  42807460 agaaaaaaaagaattatatattgtgattgttgtgtactcgtatccaaaagcgctactatttataaagaaaaatagtacc 42807382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 20275152 - 20275055
Alignment:
Q  78 cagagaacagaaaaagaagaa------ctatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    |||||||||||||||||||||      ||| |||||||||||||||||||||| || |||||| ||||||||||||||||| |||||||||| ||||||    
T  20275152 cagagaacagaaaaagaagaaaaaaaactacattttgtgattgttgtgtactcatatccaaaagtgctactatttatatag-aaaatagtactataacg 20275055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 13497119 - 13497055
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  13497119 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 13497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 42436248 - 42436184
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  42436248 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 42436184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 45537448 - 45537370
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||| | ||| ||||||||||||| |||||||||||||| |||||||||||| || ||||| ||||||||||||||    
T  45537448 gcattaaaagattatattatatttcatgcaacctacaaaaaat-aacttcataacatttgaaatttaataatatcttatt 45537370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 20274968 - 20274904
Alignment:
Q  255 ttagattatatttcatgtaacctacaa-aaaattaacttcataacaattaaaattcaataatatc 318  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | || ||||| |||||||||    
T  20274968 ttagattatatttcatgtaacctacaaaaaaattaacttcataagatttgaaatttaataatatc 20274904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 32050341 - 32050277
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  32050341 gcattaaacgattaaattatatttcatgtaatgtacaaaaaattaacttcataacatttgaaatt 32050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 4650852 - 4650942
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  4650852 agaacagaaaaagaagaactatattttgtgattgttgtgtacttatacccaaaagtgctactatttatatagaaaaatagtaccataacgg 4650942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 4720123 - 4720216
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  4720123 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgttttcaaaagtgctactatttatatagaaaaatagtaccataacgg 4720216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 40263999 - 40263920
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  40263999 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttaaaatttaataatatcttatt 40263920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 39121898 - 39121988
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  39121898 agaacagaaaacgaagaactatattttgtgattgttatgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 39121988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 42842416 - 42842506
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  42842416 agaacagaaaatgaagaactatattttgtaattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 42842506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 6905171 - 6905086
Alignment:
Q  86 agaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||| |||||||||||||| ||||||    
T  6905171 agaaaaaaaagaactatattttgtgattgttgtgtactcgtatccaaaagcgctactatttataaagaaaaatagtaccgtaacgg 6905086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 12256054 - 12256144
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  12256054 agaacagaaaacgaataactacattttgtgattgttgtttactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 12256144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 40264159 - 40264081
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaata 159  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||||    
T  40264159 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactattgatataaaaaaata 40264081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 6905013 - 6904934
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| || ||||| ||||||||||||||    
T  6905013 gcattaaacgattagattatatttcatgtaacctataaaaaattatcttcataacatttgaaatttaataatatcttatt 6904934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 3554566 - 3554644
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||    
T  3554566 cattaaatgattagattatatttcatgtaacctacaaaaaattaacttcataatatttgaaatttaataatatcttatt 3554644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 42224630 - 42224552
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||| | || ||||| ||||||||||||||    
T  42224630 cattaaacgattagattatatttcatgtaacctacaaaaaattaactttataagatttgaaatttaataatatcttatt 42224552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 4651015 - 4651095
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctac-aaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  4651015 gcattaaacgattagattatatttgatgtaacctacaaaaaaattaacttcataacatttgaaatttaataatatcttatt 4651095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 9617099 - 9617012
Alignment:
Q  83 aacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||||||  | ||||||||||| ||||||||||||| |||||||    
T  9617099 aacataaaaagaagaactatattttatgattgttgtgtactcgtatccaaaagcg-tactatttatacagaaaaatagtactataacgg 9617012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 4720288 - 4720367
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| ||| |||||| || ||||| ||||||||||||||    
T  4720288 gcattaaacgattagattatatttcatgtaacctataaaaaattatctttataacatttgaaattgaataatatcttatt 4720367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 9616939 - 9616863
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatctta 321  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||  || ||||| ||||||||||||    
T  9616939 gcattaaacgattagattatatttcatgtaacgtacaaaaaattaacttcataac-tttgaaatttaataatatctta 9616863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 42224809 - 42224750
Alignment:
Q  97 aactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaa 156  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  42224809 aactatattttgtgattgttgtgtactcatacccaaacttgctactatttatatagaaaa 42224750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 3554415 - 3554487
Alignment:
Q  97 aactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    ||||||||||||||||||||||||| || |||| |||| |||||||||||||||| ||||||||||| ||||||    
T  3554415 aactatattttgtgattgttgtgtattcatacctaaaagtgctactatttatata-aaaaatagtactataacg 3554487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 12256217 - 12256281
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  12256217 gcattaaacggttaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 12256281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 39122061 - 39122125
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  39122061 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 39122125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 42842579 - 42842643
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  42842579 gcattaaacaattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 42842643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 22511006 - 22510913
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  22511006 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcatgaccaaaaatgctactatttatatagaaaaatagtatcataacgg 22510913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 4271014 - 4271104
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  4271014 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 4271104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 14180701 - 14180611
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  14180701 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 14180611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 22510838 - 22510761
Alignment:
Q  246 attaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22510838 attaaatgattagattatatttcatgtaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 22510761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 18902535 - 18902626
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  18902535 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 18902626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 18902709 - 18902777
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18902709 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 18902777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 19421169 - 19421092
Alignment:
Q  246 attaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  19421169 attaaatgattagattatatttcatgtaacttacaaaaaattaacttcataacatttaaaattcaataatattttatt 19421092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 19421334 - 19421244
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||| |||||||||   ||||||||||||||||||||||||||| |||||||    
T  19421334 cagagaacagaaaaagaa---ctatattttatgattgttgtgtacttgtacccaaatgcgctactatttatatagaaaaatagtacgataacgg 19421244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 14176165 - 14176075
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||| ||||| ||| ||||| |||||||||||||| ||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  14176165 agaacggaaaacgaataactacattttgtgattgttatgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 14176075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 4271177 - 4271241
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  4271177 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 4271241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 14176002 - 14175938
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  14176002 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 14175938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 14180538 - 14180474
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  14180538 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 14180474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 927 - 837
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||||    
T  927 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgttctcaaaagcgctactatttatatagaaaaatagtaccataacgg 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 764 - 685
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  764 gcattaaacgattagattatatttcatgtaacctataaaaaattaacttcataacatttaaaatttaataatatcttatt 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 12501088 - 12501177
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  12501088 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgta-ccaaaaacgctactattgatatagaaaaatagtaccataacgg 12501177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 39621514 - 39621607
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  39621514 cagagaacaaaaatagaagaactatattttgtgattgttgtgtactcgtacccaaaagcgctactatttatatagaaaaatagtatcataacgg 39621607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 6417323 - 6417233
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||    
T  6417323 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaatagtaccataacgg 6417233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 22514573 - 22514483
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  22514573 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 22514483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 40558156 - 40558066
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  40558156 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtaccataacgg 40558066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 33442082 - 33441989
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||||||||||||||||||    
T  33442082 cagagaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaagctctgctatttatatagaaaaatagtaccataacgg 33441989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 12501250 - 12501329
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  12501250 gcattaaacgattagattatatttcatgtaacctacaaaaaattaacttcataacatttaaaatttaataatatcttatt 12501329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 13279146 - 13279236
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  13279146 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 13279236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 16428907 - 16428817
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  16428907 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 16428817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 18385015 - 18385106
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatat-agaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  18385015 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaaatagtaccataacgg 18385106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 36895957 - 36896047
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || ||||||   | ||||||||||||||||||||||||||||||||    
T  36895957 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatatccaaaatctccactatttatatagaaaaatagtaccataacgg 36896047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 6417150 - 6417082
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6417150 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 6417082  T

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Target: chr8; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 18385189 - 18385257
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18385189 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 18385257  T

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Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 29088558 - 29088641
Alignment:
Q  86 agaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||    
T  29088558 agaaaaagaaaaactatattttgtgattgttgtgtactcatacccaaaagtgctactatttatatag-aaaatagtactataacg 29088641  T

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Target: chr8; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 16888177 - 16888255
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  16888177 cattaaatgattagattatatttcatgtaacctacaaaaaattaacttcataatatttaaaatttaataatatcttatt 16888255  T

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Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 39621691 - 39621759
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  39621691 ttagattatattttatgtaacctacaaaaaattaatttcataacatttaaaattcaataatagcttatt 39621759  T

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Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 16885906 - 16885978
Alignment:
Q  97 aactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacg 170  Q
    ||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||| |||||||||| ||||||    
T  16885906 aactatattttatgattgttgtgtactcatacctaaaagtgctactatttatatag-aaaatagtactataacg 16885978  T

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Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 13279309 - 13279373
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  13279309 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 13279373  T

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Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 16428744 - 16428680
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  16428744 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 16428680  T

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Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 22514410 - 22514346
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  22514410 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 22514346  T

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Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 33441916 - 33441852
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  33441916 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 33441852  T

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Target: chr8; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 40557993 - 40557929
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  40557993 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 40557929  T

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Target: chr8; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 36896120 - 36896175
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataaca 299  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  36896120 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataaca 36896175  T

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Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 29088720 - 29088800
Alignment:
Q  245 cattaaacgtttagattatatttcatgtaacctacaaaaaa--ttaacttcataacaattaaaattcaataatatcttatt 323  Q
    ||||||| | ||||||||||||||||||||| |||||||||  | |||||||||| | || ||||| ||||||||||||||    
T  29088720 cattaaatgattagattatatttcatgtaacgtacaaaaaaattaaacttcataagatttgaaatttaataatatcttatt 29088800  T

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Target: scaffold0009 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 198312 - 198402
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||    
T  198312 agaatagaaaaagaagaactatattttgtgattgttgtgtactcgtacctaaaagcgctactatttatataaaaaaatagtaccataacgg 198402  T

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Target: scaffold0009; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 198485 - 198553
Alignment:
Q  255 ttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaattcaataatatcttatt 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  198485 ttagattatatttcatctaacctacaaaaaattaacttcataacatttaaaattcaataatatcttatt 198553  T

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Target: scaffold1788 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold1788
Description:

Target: scaffold1788; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 811 - 904
Alignment:
Q  78 cagagaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  811 cagaaaacagaaaacgaaaaactatattttgtgattgttgtgtactcatacccaaaaactctactatttatatagaaaaatagtaccataacgg 904  T

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Target: scaffold1788; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 977 - 1043
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctac--aaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| |||  |||||||||||||||||||| || |||||    
T  977 gcattaaacgattaaattatatttcatgtaacgtacaaaaaaaattaacttcataacatttgaaatt 1043  T

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Target: scaffold0007 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 11832 - 11742
Alignment:
Q  81 agaacagaaaaagaagaactatattttgtgattgttgtgtactcgtacccaaaaatgctactatttatatagaaaaatagtaccataacgg 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||    
T  11832 agaacagaaaacgaagaactatattttgtgattgttgtgtactcatacccaaaatctctactatttatatagaaaaatagtatcataacgg 11742  T

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Target: scaffold0007; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 11669 - 11605
Alignment:
Q  244 gcattaaacgtttagattatatttcatgtaacctacaaaaaattaacttcataacaattaaaatt 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  11669 gcattaaacgattaaattatatttcatgtaacgtacaaaaaattaacttcataacatttgaaatt 11605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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