View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0861_low_7 (Length: 252)

Name: NF0861_low_7
Description: NF0861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0861_low_7
NF0861_low_7
[»] chr4 (4 HSPs)
chr4 (134-231)||(40012141-40012238)
chr4 (1-89)||(40012007-40012095)
chr4 (1-53)||(10355239-10355291)
chr4 (1-53)||(31053046-31053098)
[»] scaffold0245 (1 HSPs)
scaffold0245 (5-49)||(5659-5703)
[»] scaffold0229 (1 HSPs)
scaffold0229 (5-49)||(5989-6033)
[»] chr1 (4 HSPs)
chr1 (5-49)||(1279981-1280025)
chr1 (2-58)||(35120168-35120224)
chr1 (1-58)||(28016578-28016635)
chr1 (1-58)||(48252402-48252459)
[»] chr7 (2 HSPs)
chr7 (1-52)||(7465266-7465317)
chr7 (1-51)||(45429320-45429370)
[»] chr3 (1 HSPs)
chr3 (1-52)||(35970437-35970488)
[»] chr8 (1 HSPs)
chr8 (3-53)||(25487649-25487699)
[»] chr5 (2 HSPs)
chr5 (4-58)||(17358519-17358573)
chr5 (1-82)||(11649039-11649120)
[»] chr2 (2 HSPs)
chr2 (1-51)||(13056660-13056710)
chr2 (18-58)||(1465829-1465869)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 40012141 - 40012238
Alignment:
Q  134 gtaggttgtgtgataaggaaattggggctaaggattggaaattttcgaggttgatgaagctgtctggattgtctttcacggagggtcagttgatgatg 231  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012141 gtaggttgtgtgataaggaaattagggctaaggattggaaattttcgaggttgatgaagctgtctggattgtctttcacggagggtcagttgatgatg 40012238  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 40012007 - 40012095
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaacttgattga 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012007 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaacttgattga 40012095  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10355291 - 10355239
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 53  Q
    |||||||||||||||||||  || |||| ||||| ||||| ||||||||||||    
T  10355291 atattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataatt 10355239  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31053046 - 31053098
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 53  Q
    ||||||||||||||||  |  ||||||||||||  ||||||||||||||||||    
T  31053046 atattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

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Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 5703 - 5659
Alignment:
Q  5 tcattaattgacatggaaacacatcattgagtgcatgtgtaaaat 49  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||    
T  5703 tcattaattgacgtggcaacacatcattgggtgcatgtgtaaaat 5659  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 6033 - 5989
Alignment:
Q  5 tcattaattgacatggaaacacatcattgagtgcatgtgtaaaat 49  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||    
T  6033 tcattaattgacgtggcaacacatcattgggtgcatgtgtaaaat 5989  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 1280025 - 1279981
Alignment:
Q  5 tcattaattgacatggaaacacatcattgagtgcatgtgtaaaat 49  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||    
T  1280025 tcattaattgacgtggcaacacatcattgggtgcatgtgtaaaat 1279981  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 35120168 - 35120224
Alignment:
Q  2 tattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 58  Q
    |||| |||||||||||||| || |||||||||  |||||||||||||||| ||||||    
T  35120168 tatttattaattgacatggcaatacatcattggatgcatgtgtaaaataactttaca 35120224  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28016635 - 28016578
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 58  Q
    |||||| |||||||| |||  ||||||||||||| || ||||||||||||||| ||||    
T  28016635 atattcgttaattgaaatgacaacacatcattgaatgtatgtgtaaaataattgtaca 28016578  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48252459 - 48252402
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 58  Q
    ||||| |||||||||  ||||||||||||||||| || ||||||||||| ||| ||||    
T  48252459 atatttattaattgatgtggaaacacatcattgaatgtatgtgtaaaattattgtaca 48252402  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7465317 - 7465266
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 52  Q
    ||||||||||||||||||  |||||||| ||||| | |||||||||||||||    
T  7465317 atattcattaattgacataaaaacacataattgaatccatgtgtaaaataat 7465266  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45429320 - 45429370
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 51  Q
    |||||||||||||||||||| |||| ||||||   ||||||||||||||||    
T  45429320 atattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35970488 - 35970437
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 52  Q
    |||||||||||||||| ||  ||||||| ||||| |||||||||||||||||    
T  35970488 atattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataat 35970437  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 25487649 - 25487699
Alignment:
Q  3 attcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 53  Q
    |||||||||||||| ||| ||||||||||||| |  |||||||||||||||    
T  25487649 attcattaattgacgtggcaacacatcattgaatatatgtgtaaaataatt 25487699  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 17358573 - 17358519
Alignment:
Q  4 ttcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 58  Q
    |||||||||||||||| | ||||||||| |  |||||||||||||||| ||||||    
T  17358573 ttcattaattgacatgaagacacatcatagtatgcatgtgtaaaataactttaca 17358519  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11649120 - 11649039
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaact 82  Q
    ||||||||||||||| |||  ||||||||||||  ||||||| |||||||| ||||||  ||| || ||  |||||||||||    
T  11649120 atattcattaattgagatgtcaacacatcattgtatgcatgtataaaataactttacatagttggtgtataaaaattaaact 11649039  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13056660 - 13056710
Alignment:
Q  1 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 51  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||||||    
T  13056660 atattcattcattgatgtggcaacacatcattgaatgcatgtgtaaaataa 13056710  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 1465829 - 1465869
Alignment:
Q  18 tggaaacacatcattgagtgcatgtgtaaaataattttaca 58  Q
    ||||||||||||||||  |||||||||||||||||| ||||    
T  1465829 tggaaacacatcattggatgcatgtgtaaaataattgtaca 1465869  T

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