View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0861_low_8 (Length: 251)

Name: NF0861_low_8
Description: NF0861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0861_low_8
NF0861_low_8
[»] chr1 (4 HSPs)
chr1 (1-164)||(52044627-52044796)
chr1 (181-236)||(27533267-27533322)
chr1 (183-236)||(47417807-47417860)
chr1 (200-237)||(49798308-49798345)
[»] chr8 (8 HSPs)
chr8 (188-238)||(6471533-6471583)
chr8 (183-232)||(32286348-32286397)
chr8 (182-238)||(29924900-29924956)
chr8 (197-236)||(23159465-23159504)
chr8 (183-236)||(10601787-10601840)
chr8 (183-236)||(12748925-12748978)
chr8 (198-238)||(18533691-18533731)
chr8 (188-236)||(32051521-32051569)
[»] chr4 (4 HSPs)
chr4 (192-240)||(28568225-28568273)
chr4 (183-236)||(20799378-20799431)
chr4 (183-236)||(28435232-28435285)
chr4 (196-240)||(24675066-24675110)
[»] chr3 (9 HSPs)
chr3 (190-240)||(28965768-28965818)
chr3 (183-236)||(11358258-11358311)
chr3 (177-236)||(48849741-48849800)
chr3 (196-238)||(54020646-54020688)
chr3 (183-236)||(16792958-16793011)
chr3 (183-236)||(22843488-22843541)
chr3 (183-236)||(29631210-29631263)
chr3 (183-236)||(38130943-38130996)
chr3 (183-239)||(20612261-20612317)
[»] chr5 (4 HSPs)
chr5 (189-236)||(41630102-41630149)
chr5 (183-236)||(19248503-19248556)
chr5 (183-236)||(22522785-22522838)
chr5 (200-236)||(31280043-31280079)
[»] scaffold0011 (1 HSPs)
scaffold0011 (190-236)||(185287-185333)
[»] chr7 (5 HSPs)
chr7 (189-234)||(14046601-14046646)
chr7 (189-234)||(14356631-14356676)
chr7 (183-236)||(46987110-46987163)
chr7 (200-236)||(39926539-39926575)
chr7 (198-238)||(47677576-47677616)
[»] chr2 (2 HSPs)
chr2 (183-236)||(29544651-29544704)
chr2 (196-240)||(40295455-40295499)
[»] chr6 (2 HSPs)
chr6 (188-240)||(2445319-2445371)
chr6 (188-240)||(26548271-26548323)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 52044796 - 52044627
Alignment:
Q  1 gatagtgttcttgtgtttcaactttttcaatggaactgccaaatgg-atcatttgtttccagaaaacactgaatctcat-----gtcttgtgtttgtcca 94  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  52044796 gatagtgttgttgtgtttcaactttttcaatggaactgccaaatgggatcatttgtttccagaaaacactgaatctcatctcatgtcttgtgtttgtcca 52044697  T
Q  95 tgcatcctttctcttttttggtgggtcccaaatccattttctagaactcactacaattctgctatcaata 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044696 tgcatcctttctcttttttggtgggtcccaaatccattttctagaactcactacaattctgctatcaata 52044627  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 27533322 - 27533267
Alignment:
Q  181 tcttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||||| |||||||  |||||||| |||||||||  ||||||||||||||||||||    
T  27533322 tctttttggtggtggtcggggtttgaaccccgaaccttgcatatattatgcattgt 27533267  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 47417860 - 47417807
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||||||| ||||| ||| |||||  ||||||||||||||||||||    
T  47417860 tttttggtggtgaccgaggtttgaactccgaaccttgcatatattatgcattgt 47417807  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 49798308 - 49798345
Alignment:
Q  200 ggtttcaaccccgaatattgcatatattatgcattgtt 237  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  49798308 ggtttgaaccccgaacattgcatatattatgcattgtt 49798345  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 6471583 - 6471533
Alignment:
Q  188 ggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgttc 238  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  6471583 ggtggtggccggggtttgaaccccgaacattgcatatattatgcattgttc 6471533  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 32286348 - 32286397
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgca 232  Q
    |||| ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  32286348 tttttggtggtggccggggtttgaaccccgaatcttgcatatattatgca 32286397  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 29924900 - 29924956
Alignment:
Q  182 cttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgttc 238  Q
    ||||| ||||||| | ||||||| |||||||||  ||||||||||||||||||||||    
T  29924900 ctttttggtggtgtctggggtttaaaccccgaaccttgcatatattatgcattgttc 29924956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 23159504 - 23159465
Alignment:
Q  197 cggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  23159504 cggggtttgaaccccgaatcttgcatatattatgcattgt 23159465  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 10601840 - 10601787
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||| ||| ||||||||| || ||||||| ||||||||||||||||||||    
T  10601840 tttttggttgtggccggggtttgaatcccgaatcttgcatatattatgcattgt 10601787  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 12748978 - 12748925
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  12748978 tttttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgt 12748925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 18533731 - 18533691
Alignment:
Q  198 ggggtttcaaccccgaatattgcatatattatgcattgttc 238  Q
    ||||||| ||||||| || ||||||||||||||||||||||    
T  18533731 ggggtttgaaccccggatcttgcatatattatgcattgttc 18533691  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 32051521 - 32051569
Alignment:
Q  188 ggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    ||||||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  32051521 ggtggtggccggggtttgaaccccggaccttgcatatattatgcattgt 32051569  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 28568273 - 28568225
Alignment:
Q  192 gtgaccggggtttcaaccccgaatattgcatatattatgcattgttcat 240  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  28568273 gtgaccggggtttgaaccccgaatcttgtatatattatgcattgttcat 28568225  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 20799378 - 20799431
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| |||||||||| |||||| ||||||| |  ||||||||||||||||||||    
T  20799378 tttttggtggtgaccagggtttgaaccccggaccttgcatatattatgcattgt 20799431  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 28435232 - 28435285
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||| | ||||||| |||||||||  ||||||||||||||||||||    
T  28435232 tttttggtggtggctggggtttgaaccccgaaccttgcatatattatgcattgt 28435285  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 24675066 - 24675110
Alignment:
Q  196 ccggggtttcaaccccgaatattgcatatattatgcattgttcat 240  Q
    ||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  24675066 ccgggatttgaaccccaaatcttgcatatattatgcattgttcat 24675110  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 28965768 - 28965818
Alignment:
Q  190 tggtgaccggggtttcaaccccgaatattgcatatattatgcattgttcat 240  Q
    ||||||||||||||| |||||||||  || |||||||||||||||||||||    
T  28965768 tggtgaccggggtttgaaccccgaaccttacatatattatgcattgttcat 28965818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 11358311 - 11358258
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||||||||||| ||||||||| ||||||| || |||||||||||||| |||||    
T  11358311 ttttgggtggtggccggggtttgaaccccggatcttgcatatattatgaattgt 11358258  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 48849741 - 48849800
Alignment:
Q  177 gtattcttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    ||||||||||  |||||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  48849741 gtattcttttttgtggtggccggggtttgaaccccggaccttgcatatattatgcattgt 48849800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 54020646 - 54020688
Alignment:
Q  196 ccggggtttcaaccccgaatattgcatatattatgcattgttc 238  Q
    ||||||| | ||||||||||||| |||||||||||||||||||    
T  54020646 ccggggtctgaaccccgaatattacatatattatgcattgttc 54020688  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 16792958 - 16793011
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||||||||||||| ||||| | |  ||||||||||||||||||||    
T  16792958 tttttggtggtgaccggggtttgaaccctggaccttgcatatattatgcattgt 16793011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 22843541 - 22843488
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    ||||| |||||| | |||||||||||||||||  || |||||||||||||||||    
T  22843541 ttttgtgtggtgtctggggtttcaaccccgaaccttacatatattatgcattgt 22843488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 29631263 - 29631210
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||| ||||||||| || ||||||  ||||||||||||||||||||    
T  29631263 tttttggtggtggccggggtttgaatcccgaaccttgcatatattatgcattgt 29631210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 38130943 - 38130996
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  38130943 tttttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgt 38130996  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 20612261 - 20612317
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgttca 239  Q
    |||| ||| ||| ||||||||| |||||| ||  |||||||||||||||||||||||    
T  20612261 tttttggtagtggccggggtttgaaccccaaaccttgcatatattatgcattgttca 20612317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 41630102 - 41630149
Alignment:
Q  189 gtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||||||||||||||| || ||||||  ||||||||||||||||||||    
T  41630102 gtggtgaccggggtttgaatcccgaaccttgcatatattatgcattgt 41630149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 19248556 - 19248503
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| |||||||||| || ||| |||||| || |||||||||||||||||||||    
T  19248556 tttttggtggtgaccaggatttgaaccccaaacattgcatatattatgcattgt 19248503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 22522785 - 22522838
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  22522785 tttttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgt 22522838  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 31280079 - 31280043
Alignment:
Q  200 ggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  31280079 ggtttgaaccccggatattgcatatattatgcattgt 31280043  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 185333 - 185287
Alignment:
Q  190 tggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    ||||||||||||||| ||||||| || |||||||| |||||||||||    
T  185333 tggtgaccggggtttgaaccccggatcttgcatattttatgcattgt 185287  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 14046601 - 14046646
Alignment:
Q  189 gtggtgaccggggtttcaaccccgaatattgcatatattatgcatt 234  Q
    |||||| ||||||||| ||||||| || ||||||||||||||||||    
T  14046601 gtggtggccggggtttgaaccccgtatcttgcatatattatgcatt 14046646  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 14356631 - 14356676
Alignment:
Q  189 gtggtgaccggggtttcaaccccgaatattgcatatattatgcatt 234  Q
    |||||| ||||||||| ||||||| || ||||||||||||||||||    
T  14356631 gtggtggccggggtttgaaccccgtatcttgcatatattatgcatt 14356676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 46987163 - 46987110
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||||||||||| ||||||||  ||||||| |  ||||||||||||||||||||    
T  46987163 ttttgggtggtgtccggggttcgaaccccggaccttgcatatattatgcattgt 46987110  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 39926539 - 39926575
Alignment:
Q  200 ggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  39926539 ggtttgaaccccgaacattgcatatattatgcattgt 39926575  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 47677576 - 47677616
Alignment:
Q  198 ggggtttcaaccccgaatattgcatatattatgcattgttc 238  Q
    ||||||| ||||||||| ||||||||| |||||||||||||    
T  47677576 ggggtttgaaccccgaacattgcatattttatgcattgttc 47677616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 29544704 - 29544651
Alignment:
Q  183 ttttgggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgt 236  Q
    |||| ||||||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  29544704 tttttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgt 29544651  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 40295455 - 40295499
Alignment:
Q  196 ccggggtttcaaccccgaatattgcatatattatgcattgttcat 240  Q
    ||||||||| |||| ||||| ||||||| ||||||||||||||||    
T  40295455 ccggggtttgaacctcgaatcttgcatacattatgcattgttcat 40295499  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 2445371 - 2445319
Alignment:
Q  188 ggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgttcat 240  Q
    |||||||  |||||||  |||||||||| ||| ||||||||||||||||||||    
T  2445371 ggtggtggtcggggttcgaaccccgaatcttgtatatattatgcattgttcat 2445319  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 26548323 - 26548271
Alignment:
Q  188 ggtggtgaccggggtttcaaccccgaatattgcatatattatgcattgttcat 240  Q
    ||||||| | ||||||| |||||||||  ||||||||||||| ||||||||||    
T  26548323 ggtggtggctggggtttgaaccccgaaccttgcatatattatacattgttcat 26548271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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