View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_high_2 (Length: 452)
Name: NF0862_high_2
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_high_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 75 - 452
Target Start/End: Original strand, 29690116 - 29690493
Alignment:
| Q |
75 |
aaaccaaccatcgatcagtgaagatcgatcgatctaccatgagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatc |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690116 |
aaaccaaccatcgatcagtgaagatcgatcgatctaccatgagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatc |
29690215 |
T |
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| Q |
175 |
ttcatcggaaaacttaccaccgtcgaaactgaccaagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcatta |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690216 |
ttcatcggaaaacttaccaccgtcgaaactgaccaagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcatta |
29690315 |
T |
|
| Q |
275 |
ccggaaaatttaccaccgtcgaaactaatcacgagaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccgg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29690316 |
ccggaaaatttaccaccgtcgaaactaatcacgagaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccctgaaatcttcaccgg |
29690415 |
T |
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| Q |
375 |
aaaatttagcagcggcgaaacgggccgaagatcgatctaccatctgtccaccttcaccggccggaagtccaatgaaaa |
452 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
29690416 |
aaaatttagcagcggcgaaacggaccgaagatcgatctaccatctgtccatcttcaccggccggaagtccattgaaaa |
29690493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 75 - 452
Target Start/End: Original strand, 29717628 - 29718005
Alignment:
| Q |
75 |
aaaccaaccatcgatcagtgaagatcgatcgatctaccatgagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatc |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29717628 |
aaaccaaccatcgatcagtgaagatcgatcgatctaccatgagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatc |
29717727 |
T |
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| Q |
175 |
ttcatcggaaaacttaccaccgtcgaaactgaccaagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcatta |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29717728 |
ttcatcggaaaacttaccaccgtcgaaactgaccaagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcatta |
29717827 |
T |
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| Q |
275 |
ccggaaaatttaccaccgtcgaaactaatcacgagaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccgg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29717828 |
ccggaaaatttaccaccgtcgaaactaatcacgagaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccctgaaatcttcaccgg |
29717927 |
T |
|
| Q |
375 |
aaaatttagcagcggcgaaacgggccgaagatcgatctaccatctgtccaccttcaccggccggaagtccaatgaaaa |
452 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
29717928 |
aaaatttagcagcggcgaaacggaccgaagatcgatctaccatctgtccatcttcaccggccggaagtccattgaaaa |
29718005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 30828267 - 30828187
Alignment:
| Q |
75 |
aaaccaaccatcgatcagtgaagatcgatcgatctaccatgagaacctgctgctctcacaccctgcccatgaaaaggaaaa |
155 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||| | ||| | |||| ||||| | ||||||||||||| |
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| T |
30828267 |
aaaccaaccatctatcaatgaagatcgatcgatctaccatgagatctggctacgctcaaaccctagcaatgaaaaggaaaa |
30828187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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