View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_high_3 (Length: 346)
Name: NF0862_high_3
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 41556790 - 41556508
Alignment:
| Q |
9 |
ttgttctgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagcattgttgaaagaaggaaaaagggttggattg |
108 |
Q |
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| T |
41556790 |
ttgttctgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagcattgttgaaagaaggaaaaagggttggattg |
41556691 |
T |
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| Q |
109 |
gattgagaaacaaagttattaggaggaaatggaagagtagttgggagtagaaaagggttgttattatagttgtatgagtctataattggatcaggttcaa |
208 |
Q |
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| T |
41556690 |
gattgagaaacaaagttattaggaggaaatggaagagtagttgggagtagaaaagggttgttattatagttgtatgagtctataattggatcaggttcaa |
41556591 |
T |
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| Q |
209 |
aggagctagtgctgccacttctgaaactataatcactgaagttagggctatgcacatagttgtagttttgtcgatgcttgatg |
291 |
Q |
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| T |
41556590 |
aggagctagtgctgccactgctgaaactataatcactgaagttagggctatgcacatagttgtagttttgtcgatgcttgatg |
41556508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 41589429 - 41589165
Alignment:
| Q |
15 |
tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagcattgttgaaagaaggaaaaagggttggattggattga |
114 |
Q |
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| T |
41589429 |
tgacacattgagaaaatgctcttcttcaaagttttctgtctgaagtacctcatgagaaagagcattattgaaagaagggaaaatggttgaattagattga |
41589330 |
T |
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| Q |
115 |
gaaacaaagttattaggaggaaatggaagagtagttgggagtagaaaagggttgttattatagttgtatgagtctataattggatcaggttcaaaggagc |
214 |
Q |
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| T |
41589329 |
gaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagc |
41589230 |
T |
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| Q |
215 |
tagtgctgccacttctgaaactataatcactgaagttagggctatgcacatagttgtagttttgt |
279 |
Q |
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| T |
41589229 |
tagtgctatcactgcttaaactataatcactgaagttagggctatccacaaagttgtagttttgt |
41589165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 41582900 - 41582725
Alignment:
| Q |
15 |
tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagcattgttgaaagaaggaaaaagggttggattggattga |
114 |
Q |
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| T |
41582900 |
tgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagcattattgaaggaagggaaaagggttgaattagattga |
41582801 |
T |
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| Q |
115 |
gaaacaaagttattaggaggaaatggaagagtagttgggagtagaaaagggttgttattatagttgtatgagtcta |
190 |
Q |
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| T |
41582800 |
gaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaattgtagttgtatgagtcta |
41582725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 41570481 - 41570240
Alignment:
| Q |
15 |
tgacacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagcattgttgaaagaaggaaaaagggttggattggattga |
114 |
Q |
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| T |
41570481 |
tgacacattgagaaaatgctcttcttcaaagttttctgtcttaatcacctcatg------------------agaagggaaaacggttgagtcgaattga |
41570400 |
T |
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| Q |
115 |
gaaacaaagttattaggaggaaatggaagagtagttgggagtagaaaagggttgttattatagttgtatgagtctataattggatcaggttcaaaggagc |
214 |
Q |
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| T |
41570399 |
gaaacaaag---tttggaggaattggaagagtatttgggagtggaaaggtgttgtaattgtagttgtatgtctctataattggttcaagttcaaaggagc |
41570303 |
T |
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| Q |
215 |
tagtgctgccacttctgaaactataatcactgaagttagggctatgcacatagttgtagtttt |
277 |
Q |
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| T |
41570302 |
tagtgctaccactgctgaaactataatcactgatgtcagggctatgcacaaatttgtagtttt |
41570240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 41579251 - 41579177
Alignment:
| Q |
190 |
ataattggatcaggttcaaaggagctagtgctgccacttctgaaactataatcactgaagttagggctatgcaca |
264 |
Q |
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| T |
41579251 |
ataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagttagggctatgcaca |
41579177 |
T |
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