View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_high_4 (Length: 326)
Name: NF0862_high_4
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 100 - 263
Target Start/End: Complemental strand, 10693760 - 10693597
Alignment:
| Q |
100 |
ctaatatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10693760 |
ctaatatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtga |
10693661 |
T |
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| Q |
200 |
tgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10693660 |
tgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
10693597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 10707544 - 10707393
Alignment:
| Q |
112 |
tttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcc |
211 |
Q |
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|||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
10707544 |
tttgccttttggattaagcttatgtttgcaacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggtgttgatgttctttc |
10707445 |
T |
|
| Q |
212 |
cacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
263 |
Q |
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|| | ||||||| || | ||||||| |||||||||| |||||||||||||| |
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| T |
10707444 |
cagaaaattgggaaacacttggatactttatcatatatacaatatggttcat |
10707393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 115 - 263
Target Start/End: Complemental strand, 10698332 - 10698184
Alignment:
| Q |
115 |
gccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccac |
214 |
Q |
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| T |
10698332 |
gccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccag |
10698233 |
T |
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| Q |
215 |
acaattggggaatatgtggatacattatcatatacacaatatggttcat |
263 |
Q |
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| T |
10698232 |
aaaattgtggactatttggatacattacaatatacacattatggttcat |
10698184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 104 - 263
Target Start/End: Complemental strand, 10657633 - 10657474
Alignment:
| Q |
104 |
tatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgat |
203 |
Q |
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|||||| ||||||||||||||||||||| |||||||| | || |||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||| |
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| T |
10657633 |
tatattgctttgccttttggattaagcttaagtttgctataagacttgataccctcatggaagcgtttggttcactttcaataatttctttggtgttgat |
10657534 |
T |
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| Q |
204 |
gttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
263 |
Q |
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|||| ||||| |||| |||||| ||| ||||||||||| ||| |||||| |||||||||| |
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| T |
10657533 |
gttcatcccaaacaaatggggattatttggatacattaccatttacacattatggttcat |
10657474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 263
Target Start/End: Complemental strand, 10690391 - 10690251
Alignment:
| Q |
123 |
gattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattgg |
222 |
Q |
| |
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||||||||| |||||||| || |||||||||||||| |||||||||||||||| |||||| || |||| |||||| ||||||| ||||| | |||||| |
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| T |
10690391 |
gattaagcttaagtttgctacaagggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattgg |
10690292 |
T |
|
| Q |
223 |
ggaatatgtggatacattatcatatacacaatatggttcat |
263 |
Q |
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||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
10690291 |
ggattatttggatatattatcatatacacaatatggttcat |
10690251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 10633980 - 10633884
Alignment:
| Q |
167 |
tgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
263 |
Q |
| |
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|||||||||| || |||||| |||||||||||||||||||||| || | | ||||||| || |||||||||| |||||||||||| ||||||||| |
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| T |
10633980 |
tgtttggttcgctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcat |
10633884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 15240462 - 15240585
Alignment:
| Q |
140 |
caactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacat |
239 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
15240462 |
caacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacat |
15240561 |
T |
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| Q |
240 |
tatcatatacacaatatggttcat |
263 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
15240562 |
tatcatatacacattatggttcat |
15240585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 15246802 - 15246907
Alignment:
| Q |
149 |
ttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatata |
248 |
Q |
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|||||||| | | ||||||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||||||||| ||| ||||||||||||||||| |
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| T |
15246802 |
ttgatacccttaaggaagtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacattatcatatg |
15246901 |
T |
|
| Q |
249 |
cacaat |
254 |
Q |
| |
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|||||| |
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| T |
15246902 |
cacaat |
15246907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 33777450 - 33777564
Alignment:
| Q |
149 |
ttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatata |
248 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||||||||||| | |||||| | ||| ||||||||||| ||||| ||||||||||||||| |
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| T |
33777450 |
ttgatacactcatagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatcatata |
33777549 |
T |
|
| Q |
249 |
cacaatatggttcat |
263 |
Q |
| |
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|||| ||||||||| |
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| T |
33777550 |
cacagcatggttcat |
33777564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 33774811 - 33774929
Alignment:
| Q |
149 |
ttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgat----gatgttcttcccacacaattggggaatatgtggatacattatca |
244 |
Q |
| |
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||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||||| ||||| |||||||| | ||| ||||||||||||| |
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| T |
33774811 |
ttgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgatcgatgttcctcccaaacaattggacattatcaggatacattatca |
33774910 |
T |
|
| Q |
245 |
tatacacaatatggttcat |
263 |
Q |
| |
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||||||| ||||||||||| |
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|
| T |
33774911 |
tatacacgatatggttcat |
33774929 |
T |
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