View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_1 (Length: 627)
Name: NF0862_low_1
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 20613838 - 20614160
Alignment:
| Q |
17 |
tggcagaggcgcggttgttgcaactactggagtagcggtttgcactagagaagatcataatcgaggaatctatgggatttcatatacatgttattgaact |
116 |
Q |
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| T |
20613838 |
tggcagaggcgcggttgttgcaactattggagtagcagtttgcactagagaagatcataatcgaggaatctatgggatttcatatacacgttattgaact |
20613937 |
T |
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| Q |
117 |
agggtagaattgggattgagatttatattccataacagagagagtgtaagagattattcacaatgctttaaagcttattttttattctctgattgttgaa |
216 |
Q |
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| T |
20613938 |
agggtagaattgggattgagatttatgttccataacagagagagtgtaagagattattcacaa-gctttaaagcttgttttttattttctgatcgttgaa |
20614036 |
T |
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| Q |
217 |
tattacattgaattgagactttaatctgtaaggtatataactaaaactaactttataagtttgttacaaggatattgttatgctacacctatactagaat |
316 |
Q |
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| T |
20614037 |
tattacattgaattgagtttttaatctgtaagctatataactaaaactaactttataagtttgttacaaggatagtgttatgctacacctatact-gaat |
20614135 |
T |
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| Q |
317 |
aattatcctgcacatgtggaagctg |
341 |
Q |
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| T |
20614136 |
aattatcctgcacatgtggaagctg |
20614160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 347 - 564
Target Start/End: Original strand, 20614214 - 20614430
Alignment:
| Q |
347 |
agagcttgacatctcatagaggattacatggcttcttctgttgaagcataccaccgtagaatggttgtacataatgcaaccgcggattccatcaattcgg |
446 |
Q |
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| T |
20614214 |
agagcttaacatctcatagaggattacatggcttcttctgttgaagcataccgcagtagaatggttgtacataatgcaaccgtgaattccatcaattcgg |
20614313 |
T |
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| Q |
447 |
ctgcaagtgttatggggaagcaacaacgtgcttcctatttcatggcagcgaactcaagatatagtacaatgtaatgtttaatgttgatgcctctttctcg |
546 |
Q |
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| T |
20614314 |
ctgcaagtgttatggggaagcaacaacatgcttcctatttcatggcagcgaactcaagatatagtacaatgtaatg-ttaatgttgatgcctctttctcg |
20614412 |
T |
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| Q |
547 |
gatgagcggcgtaaaaca |
564 |
Q |
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| T |
20614413 |
gatgagctgcataaaaca |
20614430 |
T |
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