View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_10 (Length: 322)
Name: NF0862_low_10
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 42658544 - 42658262
Alignment:
| Q |
30 |
cattgttcaattcgattcaatgggttatggttaagggtttcgtcgtcacactcaattcaacagagattgaaaacgatgtcgtttggattagggnnnnnnn |
129 |
Q |
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| T |
42658544 |
cattgttcaattcgattcaatgggttatggttaagggtttcgtcgtcacactcaattcaacagagattgaaaacgatgtcgtttggattagggttttttt |
42658445 |
T |
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| Q |
130 |
ctttctcgcagtgcaagaaatgaaactcacacgaacaaaaaaacacagaagg--nnnnnnnnnnnnctgtttttaaaagaaaaagtgagacaagactcag |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42658444 |
ctttctcgcagtgcaagaaatgaaactcacacgaacaaaaaaacacagaaggaaaaaaaaaaaaaactgtttttaaaagaaaaagtgagacaagactcag |
42658345 |
T |
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| Q |
228 |
agaacaaaacaagacacaacgcaggtttttcttcgaggtagtgcttgtggattttttatattcatggattgggggatcctctgtg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42658344 |
agaacaaaacaagacacaacgcaggtttttcttcgaggtagtgcttgtggattttttatattcatggatt--gggatcctctgtg |
42658262 |
T |
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