View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0862_low_14 (Length: 251)

Name: NF0862_low_14

Description: NF0862

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0862_low_14

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 213; E-Value: 1e-117

Query Start/End: Original strand, 21 - 251

Target Start/End: Original strand, 50307200 - 50307427

Alignment:

Q	21	acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaataatgaagaaacaacagaaacaa	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50307200	acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaat---gaagaaacaacagaaacaa	50307296	T

Q	121	tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50307297	tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca	50307396	T

Q	221	tgatcaagttgaaagagtgcatgagattaat	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50307397	tgatcaagttgaaagtgtgcatgagattaat	50307427	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 46; E-Value: 2e-17

Query Start/End: Original strand, 185 - 234

Target Start/End: Original strand, 50307688 - 50307737

Alignment:

Q	185	tggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaa	234	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50307688	tggggaagtagaaaaaattgagaatattcaagaacatgatcaagttgaaa	50307737	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 183 - 251

Target Start/End: Original strand, 50307605 - 50307673

Alignment:

Q	183	gctggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagagtgcatgagattaat	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|
T	50307605	gctggggaagtagaaaaaattgagaatattctagaacgtgatcaagttgaaaatgtacctgagattaat	50307673	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 188 - 234

Target Start/End: Original strand, 50307448 - 50307494

Alignment:

Q	188	ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaa	234	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50307448	ggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaa	50307494	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 188 - 232

Target Start/End: Original strand, 50307529 - 50307573

Alignment:

Q	188	ggaagtagaagaaattgagaatattcaagaacatgatcaagttga	232	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	50307529	ggaagtagaaaaaattgagaatattcaagaacgcgatcaagttga	50307573	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]