View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_15 (Length: 248)
Name: NF0862_low_15
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_15 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 50307210 - 50307441
Alignment:
| Q |
14 |
agactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaataatgaagaaacaacagaaacaatcaatgttgt |
113 |
Q |
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| T |
50307210 |
agactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaat---gaagaaacaacagaaacaatcaatgttgt |
50307306 |
T |
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| Q |
114 |
tgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaacatgatcaagtt |
213 |
Q |
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| T |
50307307 |
tgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaacatgatcaagtt |
50307406 |
T |
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| Q |
214 |
gaaagtgtacatgagattaatcaatctcatgatca |
248 |
Q |
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| T |
50307407 |
gaaagtgtgcatgagattaatcaacctcatgatca |
50307441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 50307605 - 50307678
Alignment:
| Q |
166 |
gctggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatc |
239 |
Q |
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| T |
50307605 |
gctggggaagtagaaaaaattgagaatattctagaacgtgatcaagttgaaaatgtacctgagattaatcaatc |
50307678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 50307688 - 50307768
Alignment:
| Q |
168 |
tggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatctcatgatca |
248 |
Q |
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| T |
50307688 |
tggggaagtagaaaaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatcgcacgatca |
50307768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 50307448 - 50307516
Alignment:
| Q |
171 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatc |
239 |
Q |
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| T |
50307448 |
ggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatc |
50307516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 50307529 - 50307603
Alignment:
| Q |
171 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatctcatga |
245 |
Q |
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| T |
50307529 |
ggaagtagaaaaaattgagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaatcacatga |
50307603 |
T |
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