View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0862_low_16 (Length: 217)
Name: NF0862_low_16
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 35817295 - 35817491
Alignment:
| Q |
1 |
aataaaaggaaaaatttacaactagttggcttaacttgaatcattatccaacaagaaagaattactaattgcattatttgaatcttcagtcatcaacact |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35817295 |
aataaaaggaaaaatttacaactatttggcttaccttgaatcattatccaacaagaaagaattactaattgcattatttgaatcttcagtcatcaacact |
35817394 |
T |
|
| Q |
101 |
cacatattggaaatgacctagaagaaaacattgataagaaaaagatcaacatagtttttctgcattatttgaatctgcagtcatcaacacaagtcat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35817395 |
cacatattggaaatgacctagaagaaaacattgataagaaaaagatcaacatagtttttctgcattatttgaatctgcagtcatcaacacaagtcat |
35817491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 47704189 - 47704058
Alignment:
| Q |
28 |
ggcttaacttgaatcattatccaacaagaaagaattactaattgcattatttgaatcttcagtcatcaacactcacatattggaaatgacctagaagaaa |
127 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||| | |||| |
|
|
| T |
47704189 |
ggcttaccttgaatcatcatccaacaggaaagaattactaactgcattatttgaatcttcagtcatcagcactcgcatattggatattacctacatgaaa |
47704090 |
T |
|
| Q |
128 |
acattgataagaaaaagatcaacatagttttt |
159 |
Q |
| |
|
||||| ||| | |||| |||||||||||||| |
|
|
| T |
47704089 |
acatttatacggcaaagctcaacatagttttt |
47704058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University