View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_18 (Length: 202)
Name: NF0862_low_18
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 37715344 - 37715419
Alignment:
| Q |
43 |
tatatatactctacaattgtcatttacccaattacatgttctgaaaaatcgttgaacaatcaacctattatcaatatt |
120 |
Q |
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| T |
37715344 |
tatatatactttgcaattgtcatttacccaattacatgttctg--aaatcgttgaacaatcaacttattatcaatatt |
37715419 |
T |
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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 8265565 - 8265674
Alignment:
| Q |
1 |
ttgtaatgattgtaaaagaaaaaattataccgggttcaattgtatatatactctacaattgtcatttacccaattacatgttctgaaaaatcgttgaaca |
100 |
Q |
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| T |
8265565 |
ttgtaatgattgtaaaagaaaaaattataccggactcaa--------atactccacaattgtcatttaccattttacatgttctgaaa--ttgttgaaca |
8265654 |
T |
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| Q |
101 |
atcaacctattatcaatatt |
120 |
Q |
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| T |
8265655 |
atcaacctattatcaatatt |
8265674 |
T |
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