View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_3 (Length: 453)
Name: NF0862_low_3
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 29 - 433
Target Start/End: Original strand, 53926796 - 53927198
Alignment:
| Q |
29 |
ggtttaaggttttgtggagaaaacctcaagaatcctgtgagggtggttttgacagttgcaaccaatttcttttgatgttagagaaatcttattgagttgt |
128 |
Q |
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| T |
53926796 |
ggtttaaggttt-gtggagaaaacctcaagaatcctgtgagggtggttttgacagttgcaaccaatttcttttgatgttagagaaatcttattgatttgt |
53926894 |
T |
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| Q |
129 |
tgttcgtttggtggattgaataaatgagtgaatgattgtatatataaacattttgaattgattaaggtttgaagatttcacgtcagagaattttgtcaaa |
228 |
Q |
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| T |
53926895 |
tgttcgtttggtggattgaataaatgagtgaatgattgtatatataaacattttgaattgattaaggtttgaagatttcacgtcagagaattttgtcaaa |
53926994 |
T |
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| Q |
229 |
gagtgaaatttgggattttatttttattttaataaggctgtgtgtgaaggaaccttggccctgattccaatttcttgattatagttaattgttgtgttga |
328 |
Q |
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| T |
53926995 |
gagtgaaatttgggatttt-ttttttttttaataaggctgtgtgtgaaggaaccttggccctgattccaatttcttgattatagttaattgttgtgttga |
53927093 |
T |
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| Q |
329 |
ttaataattattgaggaacatgaaatttctaagcctggttgggaattcttttggatgttctgcatctggggagagactagtttctgcagcaagagatgat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53927094 |
ttaataattattgaggaacatgaaatttctaagcctggttgggaattcttttggatgttctgcatctggggagagactagtttctgcagcaagagatggt |
53927193 |
T |
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| Q |
429 |
gatgt |
433 |
Q |
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||||| |
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| T |
53927194 |
gatgt |
53927198 |
T |
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