View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_5 (Length: 411)
Name: NF0862_low_5
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 15556190 - 15555817
Alignment:
| Q |
30 |
gaaataccctatttgtttcttgaagtcatgcatttgaacttcaattttagcttgttcttcagggtcttccaccatcctagttatacaatccattaagcct |
129 |
Q |
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| T |
15556190 |
gaaataccctatttgtttcttgaagtcatgcatttgaacttcaatcttagcttgttcttcagggtcttccaccatcctagttatacaatccattaagcct |
15556091 |
T |
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| Q |
130 |
tttctcacctcaatatcagctttaaattcaggacggtaatgaagttgtgggttaagataataggctgcagcatgcaaaggcctatgtaacattctatccc |
229 |
Q |
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| T |
15556090 |
tttctcacctcaatatcagctttaaatccaggacggtaatgaagttgtgggttaagataataggctgcagcatgcaaaggcctatgtaacattctatccc |
15555991 |
T |
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| Q |
230 |
atctatcatcaatgatgttccaaacaggtttgtaactacaaagtaaaaagaattaagtaagtttaacttatggaattagaccagaagacacagataataa |
329 |
Q |
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| T |
15555990 |
atctatcatcaatgatgttccaaacaggtttgtaactacaaagtaaaaagaattaagtaagtttaacttctggaattagaccagaacacacagataataa |
15555891 |
T |
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| Q |
330 |
ctaaataaaattaaaccaaacaaagatacctctttttgacaccattaaaactcttttgaatttgctcctttgct |
403 |
Q |
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| T |
15555890 |
ctaaataaaattaaaccaaacaaagatacctctttttgacaccattaaaactcttttgaatttgctcctttgct |
15555817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 166 - 403
Target Start/End: Original strand, 8988942 - 8989171
Alignment:
| Q |
166 |
taatgaagttgtgggttaagataataggctgcagcatgcaaaggcctatgtaacattctatcccatctatcatcaatgatgttccaaacaggtttgtaac |
265 |
Q |
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| T |
8988942 |
taatgtagttgcgggttaagataataagctgcaacatgcaaaggcctatgaaatattttatcccatctatcatcaatgatgttcaaaataggtttgtaac |
8989041 |
T |
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| Q |
266 |
tacaaagtaaaaagaattaagtaagtttaacttatggaattagaccagaagacacagataataactaaataaaattaaaccaaacaaagatacctctttt |
365 |
Q |
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| T |
8989042 |
tacaaagtaaaaataattaagt---tttaacttttggaattagaccagatcaca-----tataactaaataaaattaaaccaaacaaagatgtctccttt |
8989133 |
T |
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| Q |
366 |
tgacaccattaaaactcttttgaatttgctcctttgct |
403 |
Q |
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| T |
8989134 |
tgacaccattaaaattcttttgaatttgctcctttgct |
8989171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 8988896 - 8988924
Alignment:
| Q |
39 |
tatttgtttcttgaagtcatgcatttgaa |
67 |
Q |
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| T |
8988896 |
tatttgtttcttgaagtcatgcatttgaa |
8988924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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