View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0862_low_6 (Length: 363)
Name: NF0862_low_6
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0862_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 50307792 - 50308048
Alignment:
| Q |
16 |
atcaaggaaatgatcaaaatattgtacacattcaatctgataacgagaatgagaaagaggtgattcctatagtgtcagaagaagtagcaaaagaagatca |
115 |
Q |
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| T |
50307792 |
atcaaggaaatgatcaaaatattgtacacattcaatctgataacgagaatgagaaagaggtgattcctatagtgtcagaagaagtagcaaaagaagatca |
50307891 |
T |
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| Q |
116 |
aaacaaagatgaacatgaagataatcaagaccaaaatgaaaatacggatacaaaccaagaagaaggcaacattaatgagagtgataaaaaagaaatgaat |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50307892 |
aaacaaagatgaacatgaagataatcaagatcaaaatgagaatacggatacaaaccaagaagaagggaacattaatgagagtgataaaaaagaaatgaat |
50307991 |
T |
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| Q |
216 |
gattcaacaaatgaaggagaagttatcgaggcgaaagaaaaagtagaagatcaaaag |
272 |
Q |
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| T |
50307992 |
gattcaacaaatgaaggagaagttatcgaggcgaaagaaaaagtagaagatcaaaag |
50308048 |
T |
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